View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_96 (Length: 377)
Name: NF0928_low_96
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_96 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 274 - 375
Target Start/End: Original strand, 48912662 - 48912763
Alignment:
| Q |
274 |
tgatggacagtggtgatgaagctgaaaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggtgcatatcactc |
373 |
Q |
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| T |
48912662 |
tgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggttcatctcattc |
48912761 |
T |
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| Q |
374 |
ga |
375 |
Q |
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|| |
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| T |
48912762 |
ga |
48912763 |
T |
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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 19120097 - 19120028
Alignment:
| Q |
189 |
caattcctatccctcggtcacatgtgaggtgcaggcagccaaactccagtttatacaaattaaatgttga |
258 |
Q |
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| T |
19120097 |
caattcctatccctcggtcacatgtgaagtggaggcagccaaactccaatcaatacaaattaaatgttga |
19120028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 12641798 - 12641870
Alignment:
| Q |
274 |
tgatggacagtggtgatgaagctgaaaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgc |
346 |
Q |
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| T |
12641798 |
tgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgc |
12641870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 13448225 - 13448138
Alignment:
| Q |
274 |
tgatggacagtggtgatgaagctgaaaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
361 |
Q |
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| T |
13448225 |
tgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattcaagaaggtgg |
13448138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 362
Target Start/End: Complemental strand, 28385196 - 28385108
Alignment:
| Q |
274 |
tgatggacagtggtgatgaagctgaaaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggt |
362 |
Q |
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|||||||| |||| |||||||||||||| || ||||||| |||||||||||| || ||||| |||| || || |||||||||||||| |
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| T |
28385196 |
tgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaagaaggtggt |
28385108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 6828 - 6916
Alignment:
| Q |
274 |
tgatggacagtggtgatgaagctgaaaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggt |
362 |
Q |
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||||||| ||||||| |||||||| ||||||| | | ||||||||||||||||||| || ||||||||||| | ||||||||||| |
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| T |
6828 |
tgatggatggtggtgacgaagctgagaaaatcaaaaagtatgctcgagagtttggggataaggctaaacatgcggctcaagaaggtggt |
6916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 10810 - 10877
Alignment:
| Q |
274 |
tgatggacagtggtgatgaagctgaaaaaatcagacaacatgctcgagagtttggggagaaagctaaa |
341 |
Q |
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||||||||| | || ||| |||||| | |||||||| ||||||||||||||||||||| || |||||| |
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| T |
10810 |
tgatggacaatagttatgtagctgagataatcagacgacatgctcgagagtttggggataaggctaaa |
10877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 3417844 - 3417932
Alignment:
| Q |
274 |
tgatggacagtggtgatgaagctgaaaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggt |
362 |
Q |
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||||||||||| ||||||| |||||| || |||| || |||||||||| |||| ||||| ||||||| || ||| ||||||||||| |
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| T |
3417844 |
tgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaacgagctattcaagaaggtggt |
3417932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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