View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0929_high_11 (Length: 317)
Name: NF0929_high_11
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_high_11 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0024 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 96 - 317
Target Start/End: Original strand, 10016984 - 10017205
Alignment:
| Q |
96 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10016984 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
10017083 |
T |
|
| Q |
196 |
gtgttaatttttatcattcttggcataaaatcggtcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
295 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10017084 |
gtgttcatttttatcattcttggcataaaatcgatcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
10017183 |
T |
|
| Q |
296 |
tcgaagaagcatgaatcaccaa |
317 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
10017184 |
ccgaaaaagcatgaatcaccaa |
10017205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 96 - 317
Target Start/End: Complemental strand, 26414769 - 26414548
Alignment:
| Q |
96 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26414769 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
26414670 |
T |
|
| Q |
196 |
gtgttaatttttatcattcttggcataaaatcggtcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26414669 |
gtgttaatttttatcattcttggcataaaatcggtcggttgctgggtacagatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
26414570 |
T |
|
| Q |
296 |
tcgaagaagcatgaatcaccaa |
317 |
Q |
| |
|
| || |||||||||||||||| |
|
|
| T |
26414569 |
ccaaaaaagcatgaatcaccaa |
26414548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 96 - 317
Target Start/End: Original strand, 13855255 - 13855476
Alignment:
| Q |
96 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
195 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13855255 |
aaattaatgccttggaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
13855354 |
T |
|
| Q |
196 |
gtgttaatttttatcattcttggcataaaatcggtcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13855355 |
gtgttaatttttatcattcttggcataaaatcggtcagttgctgggtaccgatggattggtttttgcaatccgaatccgaccgttcataactgtataaaa |
13855454 |
T |
|
| Q |
296 |
tcgaagaagcatgaatcaccaa |
317 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
13855455 |
ccgaaaaagcatgaatcaccaa |
13855476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 96 - 317
Target Start/End: Original strand, 8362 - 8583
Alignment:
| Q |
96 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
195 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8362 |
aaattaattccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
8461 |
T |
|
| Q |
196 |
gtgttaatttttatcattcttggcataaaatcggtcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
295 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8462 |
gtgttcatttttatcattcttggcataaaatcgttcggttgttgggttccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
8561 |
T |
|
| Q |
296 |
tcgaagaagcatgaatcaccaa |
317 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
8562 |
ctgaaaaagcatgaatcaccaa |
8583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 96 - 317
Target Start/End: Complemental strand, 7692552 - 7692352
Alignment:
| Q |
96 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7692552 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccct---------------------gtaaaa |
7692474 |
T |
|
| Q |
196 |
gtgttaatttttatcattcttggcataaaatcggtcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7692473 |
gtgttaatttttatcattcttggcataaaatcggtcggttgctgggtaccgatggattgatttttgctatccgaatccgaccgttcataactgtataaaa |
7692374 |
T |
|
| Q |
296 |
tcgaagaagcatgaatcaccaa |
317 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
7692373 |
ccgaaaaagcatgaatcaccaa |
7692352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 10474179 - 10474061
Alignment:
| Q |
100 |
taatgccttgaaattgaatagtttttg------agagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| || |||| |
|
|
| T |
10474179 |
taatgccttgaaattgaatagtttttactttttagagttccaagaaaattgagcgagagacaacaggtcttccctatgcaagccagctttcatatagtaa |
10474080 |
T |
|
| Q |
194 |
aagtgttaatttttatcat |
212 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
10474079 |
aagtgttaatttttatcat |
10474061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 5975830 - 5975774
Alignment:
| Q |
108 |
tgaaattgaatagtttttgagagttccaagacaattgagaga-gagacaacacgtct |
163 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
5975830 |
tgaaattgaatagtttttgtgagttccaagacaattgacagatgagacaacacgtct |
5975774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 5975529 - 5975467
Alignment:
| Q |
218 |
gcataaaatcggtcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgtt |
280 |
Q |
| |
|
||||| || ||||||| | ||||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
5975529 |
gcatacaaacggtcggctattgggtaccgacggattcgtttttccaatccgaatccgaccgtt |
5975467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 207 times since January 2019
Visitors: 6713