View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0929_high_7 (Length: 343)
Name: NF0929_high_7
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 308
Target Start/End: Original strand, 40306661 - 40306939
Alignment:
| Q |
30 |
cacgaaagcacttgctccatccactatataagcgaatggtcaaaattgaagaaaagatcagatagacaaatgaattcctaaccttctcagatactctgga |
129 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40306661 |
cacgaaagcacttgctccatccactatataagtgaatggtcaaaattgaagaaaagatcagatagacaaatgaattcctaaccttctcagatactctgga |
40306760 |
T |
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| Q |
130 |
actattaccatccaataattctggtgccatccatggaagggtccctctgacaccacccgaaacaagtgtgttgcgtttaattcttgataggccaaaatct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40306761 |
actattaccatccaataattctggtgccatccatggaagggtccctctgacaccacccgaaacaagtgtgttgcgtttaattcttgataggccaaaatct |
40306860 |
T |
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| Q |
230 |
ccaacctattgaacaaatttagccagagagattagaccaacaactttctttaaacaagattgctttctaaacgaaaagg |
308 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40306861 |
ccaacctattgaacaaatttagcgagagagattagaccaacaactttctttaaacaagattgctttctaaacgaaaagg |
40306939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 10453726 - 10453620
Alignment:
| Q |
131 |
ctattaccatccaataattctggtgccatccatggaagggtccctctgacaccacccgaaacaagtgtgttgcgtttaattcttgataggccaaaatctc |
230 |
Q |
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|||||||||| ||||| || |||||||||||||||||||| |||| |||||||| || ||||| || || |||||||||||||||| |||||||||| |
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| T |
10453726 |
ctattaccattcaatagctcaggtgccatccatggaagggttcctcgcacaccaccagatacaagggtattacgtttaattcttgataatccaaaatctc |
10453627 |
T |
|
| Q |
231 |
caaccta |
237 |
Q |
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||||||| |
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| T |
10453626 |
caaccta |
10453620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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