View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0929_high_9 (Length: 331)
Name: NF0929_high_9
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_high_9 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 265 - 331
Target Start/End: Original strand, 3056733 - 3056799
Alignment:
| Q |
265 |
agttgttgaacatgaatcaaagcaaaaccaacactggaataagaggaacaacagggaatgttgcact |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
3056733 |
agttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcact |
3056799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 268 - 331
Target Start/End: Complemental strand, 3070176 - 3070113
Alignment:
| Q |
268 |
tgttgaacatgaatcaaagcaaaaccaacactggaataagaggaacaacagggaatgttgcact |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
3070176 |
tgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcact |
3070113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 265 - 331
Target Start/End: Original strand, 3035865 - 3035931
Alignment:
| Q |
265 |
agttgttgaacatgaatcaaagcaaaaccaacactggaataagaggaacaacagggaatgttgcact |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||| || |||| |||||||||| |
|
|
| T |
3035865 |
agttgttgaacatgaatcaaagcaaaaccaacaccggcataagaggaataaaagggtatgttgcact |
3035931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 907 times since January 2019
Visitors: 6705