View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0929_low_1 (Length: 755)
Name: NF0929_low_1
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 3e-78; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 522 - 718
Target Start/End: Complemental strand, 32940654 - 32940458
Alignment:
| Q |
522 |
aacaaatattatttatttcttacgaaacttgtaaagccaagatgtaatatttaattaataaccttattatagaactcaacatcgttgccaatgtgaagga |
621 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
32940654 |
aacatatattatttatttcttacgaaacttgtaaagccaagatgtaatatttaattaataaccttattataaaactcaacatcgttgccaatgtgaagaa |
32940555 |
T |
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| Q |
622 |
gatttaagttctgatcaaaatgataaacatggacactggtaccattgctaccagcatcaaagacgacagcgtacgaggttagattttcttgttttgg |
718 |
Q |
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| T |
32940554 |
gatctaagttctgatcaaaatggtagacatgaacacggctaccggtgctaccagcatcaaagacgacagcgtacgaggttagagtttcttgttttgg |
32940458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 113 - 311
Target Start/End: Complemental strand, 32940923 - 32940726
Alignment:
| Q |
113 |
caaaattaagactttgttagaaaaccccaccccaagcataacgggtgttttgggctgcatattcacaggaaccactctttctacttgctctaagagtgga |
212 |
Q |
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| T |
32940923 |
caaaattaagacattgttagaaaaccc-accccaagcttaacgggtgttttgggttgcagattaacaggaaccactctttctgcttgctctaaaagtgga |
32940825 |
T |
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| Q |
213 |
atcagagactctgctgcttgcttcggattatctgcgtatgcactcaagccgggtgttgtctgcaacatgaacacaatgaaaatattataattcatacat |
311 |
Q |
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| T |
32940824 |
atcagagactctgctgcttcctttggattatctgcgtatgcactcaaaccgggtgttgtctacaacatgaacacaatgaagatattataactcatacat |
32940726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 594 - 721
Target Start/End: Complemental strand, 32932354 - 32932227
Alignment:
| Q |
594 |
aactcaacatcgttgccaatgtgaaggagatttaagttctgatcaaaatgataaacatggacactggtaccattgctaccagcatcaaagacgacagcgt |
693 |
Q |
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||||||| ||| |||||||||||||| |||| ||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||| | |||||||| |
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| T |
32932354 |
aactcaatatcattgccaatgtgaagaagatctaagttctggtcaaaatggtaaacatggacacgagtaccagtgctaccagcatcaaatatgacagcgt |
32932255 |
T |
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| Q |
694 |
acgaggttagattttcttgttttgggaa |
721 |
Q |
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| || |||| ||||||||||| |||| |
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| T |
32932254 |
aagatgttaaggtttcttgtttttggaa |
32932227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 582 - 691
Target Start/End: Complemental strand, 32910514 - 32910405
Alignment:
| Q |
582 |
accttattatagaactcaacatcgttgccaatgtgaaggagatttaagttctgatcaaaatgataaacatggacactggtaccattgctaccagcatcaa |
681 |
Q |
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||||||||| | ||||||||||| |||||||| ||||| |||| |||||||||||||||||| |||||||| | || | ||||| ||||||||||||||| |
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| T |
32910514 |
accttattaaaaaactcaacatctttgccaatatgaagaagatctaagttctgatcaaaatggtaaacatgaatacggctaccagtgctaccagcatcaa |
32910415 |
T |
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| Q |
682 |
agacgacagc |
691 |
Q |
| |
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| T |
32910414 |
acacgacagc |
32910405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 582 - 691
Target Start/End: Complemental strand, 32921903 - 32921794
Alignment:
| Q |
582 |
accttattatagaactcaacatcgttgccaatgtgaaggagatttaagttctgatcaaaatgataaacatggacactggtaccattgctaccagcatcaa |
681 |
Q |
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||||||||||| ||||||||||| || |||| ||||| ||||||||||| ||||||||||| ||||||||||||| | | ||| ||||||||||||||| |
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| T |
32921903 |
accttattataaaactcaacatctttaccaacatgaagaagatttaagttttgatcaaaatggtaaacatggacacggcttccagtgctaccagcatcaa |
32921804 |
T |
|
| Q |
682 |
agacgacagc |
691 |
Q |
| |
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| T |
32921803 |
acacaacagc |
32921794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 597 - 682
Target Start/End: Complemental strand, 32897550 - 32897465
Alignment:
| Q |
597 |
tcaacatcgttgccaatgtgaaggagatttaagttctgatcaaaatgataaacatggacactggtaccattgctaccagcatcaaa |
682 |
Q |
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|||| ||| ||||||||||||| |||| ||| ||||||||||||||| ||||||| |||| | ||||| ||||||||||||||| |
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| T |
32897550 |
tcaagatctttgccaatgtgaacaagatctaaattctgatcaaaatgaaaaacatgaacacggctaccagagctaccagcatcaaa |
32897465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 32922367 - 32922272
Alignment:
| Q |
178 |
caggaaccactctttctacttgctctaagagtggaatcagagactctgctgcttgcttc-ggattatctgcgtatgcactcaagccgggtgttgtct |
273 |
Q |
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||||||| || |||||| |||||||||| |||||||||| ||| | ||| |||| |||| |||||||| |||||||||||||| ||||| ||||||| |
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| T |
32922367 |
caggaactacactttctgcttgctctaaaagtggaatcaaagattttgcagctt-cttctggattatccgcgtatgcactcaaaccgggcgttgtct |
32922272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 32932586 - 32932467
Alignment:
| Q |
140 |
caccccaagcataacgggtgttttgggctgcatattcacaggaaccactctttctacttgctctaagagtggaatcagagactctgctgcttgcttcgga |
239 |
Q |
| |
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|||||||||| ||| |||||||||||| ||||||| | |||||| ||| |||| ||| ||| || ||||||| ||||| | ||||||||| | ||| |
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| T |
32932586 |
caccccaagcctaaggggtgttttggggtgcatatcctcaggaatcacatcttctgcttcctccaaaagtggaaggagagattttgctgcttgttcagga |
32932487 |
T |
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| Q |
240 |
ttatctgcgtatgcactcaa |
259 |
Q |
| |
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||||| || ||||||||||| |
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| T |
32932486 |
ttatccgcatatgcactcaa |
32932467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 582 - 721
Target Start/End: Complemental strand, 11822423 - 11822284
Alignment:
| Q |
582 |
accttattatagaactcaacatcgttgccaatgtgaaggagatttaagttctgatcaaaatgataaacatggacactggtaccattgctaccagcatcaa |
681 |
Q |
| |
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||||||||||| ||||||||||| || |||| ||||| ||||||||||| ||||||||||| ||||||||||||| | | ||| ||||||||||||||| |
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| T |
11822423 |
accttattataaaactcaacatctttaccaacatgaagaagatttaagttttgatcaaaatggtaaacatggacacggcttccagtgctaccagcatcaa |
11822324 |
T |
|
| Q |
682 |
agacgacagcgtacgaggttagattttcttgttttgggaa |
721 |
Q |
| |
|
| || |||||||| |||| | |||||||||||||||| |
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| T |
11822323 |
acacaacagcgtaagaggaaattgtttcttgttttgggaa |
11822284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 178 - 277
Target Start/End: Complemental strand, 11822594 - 11822495
Alignment:
| Q |
178 |
caggaaccactctttctacttgctctaagagtggaatcagagactctgctgcttgcttcggattatctgcgtatgcactcaagccgggtgttgtctgcaa |
277 |
Q |
| |
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|||||||||| |||||| |||||||||| |||||||||| ||| | ||| ||||| | |||||||| |||||||||||||| ||||||||||||||||| |
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| T |
11822594 |
caggaaccacactttctgcttgctctaaaagtggaatcaaagattttgcagcttgttctggattatccgcgtatgcactcaaaccgggtgttgtctgcaa |
11822495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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