View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0929_low_10 (Length: 406)
Name: NF0929_low_10
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 100 - 379
Target Start/End: Complemental strand, 6129746 - 6129467
Alignment:
| Q |
100 |
atacccccgagttctttttggtacatcttctgcatcatattgaaatctaattttgcaaaattcaaaataactttatcatgggaaggttcttcattgtatg |
199 |
Q |
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| T |
6129746 |
atacccccgagttctttttggtacatcttctgcatcatattgaaatctaattttgcaaaattcaaaataactttatcatgggaaggttcttcattgtatg |
6129647 |
T |
|
| Q |
200 |
aagaaatgtgataccatgtttccaacctaggaactcccttgtgaaaaggtgtatttaagcagcgacgtatttgtgtacatagaaaaggactcaattgagt |
299 |
Q |
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| T |
6129646 |
aagaaatgtgataccatgtttccaacctaggaactcccttgtgaaaaggtgtatttaagcagcgacgtatttgtgtacatagaaaaggactcaattgagt |
6129547 |
T |
|
| Q |
300 |
gttgatgtaggaattgaggtgagagtatgtgaaatcaagtgcttcatctaatatatcttcattatgaacccttaattgtg |
379 |
Q |
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| T |
6129546 |
gttgatgtaggaattgaggtgagagtatgtgaaatcaagtgcttcatctagtatatcttcattatgaacccttaattgtg |
6129467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 106 - 379
Target Start/End: Original strand, 34450506 - 34450779
Alignment:
| Q |
106 |
ccgagttctttttggtacatcttctgcatcatattgaaatctaattttgcaaaattcaaaataactttatcatgggaaggttcttcattgtatgaagaaa |
205 |
Q |
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| T |
34450506 |
ccgatttcattttgatgcattttctgcaccgtgttgaaatctaatttggcaaagtttagaagaactttactatgtgaaggttcttcaccataggaagaaa |
34450605 |
T |
|
| Q |
206 |
tgtgataccatgtttccaacctaggaactcccttgtgaaaaggtgtatttaagcagcgacgtatttgtgtacatagaaaaggactcaattgagtgttgat |
305 |
Q |
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| | | ||| ||| || |||||||||||||||||||||| |||||| ||||||| | | || |||| || |||||||||||||||| | || |||| |
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| T |
34450606 |
tataacaccttgtctctaacctaggaactcccttgtgaagaggtgtccttaagcattggcatagttgtttagcaagaaaaggactcaattcattggtgat |
34450705 |
T |
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| Q |
306 |
gtaggaattgaggtgagagtatgtgaaatcaagtgcttcatctaatatatcttcattatgaacccttaattgtg |
379 |
Q |
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| T |
34450706 |
aagggaattaaggtgagagtatgtgaaatcaagtgcttcatctaatatatcttcatcatgaatccttaattgtg |
34450779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 106 - 360
Target Start/End: Original strand, 34486971 - 34487225
Alignment:
| Q |
106 |
ccgagttctttttggtacatcttctgcatcatattgaaatctaattttgcaaaattcaaaataactttatcatgggaaggttcttcattgtatgaagaaa |
205 |
Q |
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| T |
34486971 |
ccgagttcttttttatgcattttctgcaacatgttgaaatctaattttgcaaagtttagaagaattttactatgtgaaggttcttcactataggaagaaa |
34487070 |
T |
|
| Q |
206 |
tgtgataccatgtttccaacctaggaactcccttgtgaaaaggtgtatttaagcagcgacgtatttgtgtacatagaaaaggactcaattgagtgttgat |
305 |
Q |
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||| ||| ||| ||||||||||| || |||||||||| |||||| |||||||| | ||||||| | | |||||||||||||||| | || |||| |
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| T |
34487071 |
tgtagcaccttgtctccaacctagggacccccttgtgaagaggtgtctttaagcaatggcgtatttttttctcaagaaaaggactcaatttattggtgat |
34487170 |
T |
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| Q |
306 |
gtaggaattgaggtgagagtatgtgaaatcaagtgcttcatctaatatatcttca |
360 |
Q |
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||||||| ||||||||| ||||||||||||||||||||| || |||||||||| |
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| T |
34487171 |
caaggaatttaggtgagagaatgtgaaatcaagtgcttcatttagtatatcttca |
34487225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 106 - 360
Target Start/End: Original strand, 34461255 - 34461509
Alignment:
| Q |
106 |
ccgagttctttttggtacatcttctgcatcatattgaaatctaattttgcaaaattcaaaataactttatcatgggaaggttcttcattgtatgaagaaa |
205 |
Q |
| |
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|||| ||||||||| | ||| || || | ||| ||| |||||||||||||||| || |||| ||||||| ||||||| ||||||| || ||||||| |
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| T |
34461255 |
ccgatttctttttgatgcattttttgtagcatgttgtaatctaattttgcaaagtttaaaagaactttactttgggaagattcttcaccataggaagaaa |
34461354 |
T |
|
| Q |
206 |
tgtgataccatgtttccaacctaggaactcccttgtgaaaaggtgtatttaagcagcgacgtatttgtgtacatagaaaaggactcaattgagtgttgat |
305 |
Q |
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||| | ||| | | || | ||||||||||| ||||| || |||||| ||||||||| |||||| ||||||| ||||||||||||| |||| || | |
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| T |
34461355 |
tgtaacaccttatctcaaccctaggaactctcttgtaaagaggtgtctttaagcagtgacgtacttgtgtagcaagaaaaggactcacttgattggtttc |
34461454 |
T |
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| Q |
306 |
gtaggaattgaggtgagagtatgtgaaatcaagtgcttcatctaatatatcttca |
360 |
Q |
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| T |
34461455 |
caaggtatttagtttagagtatgtgaaatcaagtgcttcatctaatatatcttca |
34461509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 109 - 359
Target Start/End: Original strand, 34475038 - 34475288
Alignment:
| Q |
109 |
agttctttttggtacatcttctgcatcatattgaaatctaattttgcaaaattcaaaataactttatcatgggaaggttcttcattgtatgaagaaatgt |
208 |
Q |
| |
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||||||||||| | ||| ||||||| |||||||||||||||||||||||| || | || || |||| ||||||||| ||||| | || ||||| |||| |
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| T |
34475038 |
agttctttttgatgcattttctgcagcatattgaaatctaattttgcaaagtttagaaaaaatttactatgggaaggatcttcttcataggaagatatgt |
34475137 |
T |
|
| Q |
209 |
gataccatgtttccaacctaggaactcccttgtgaaaaggtgtatttaagcagcgacgtatttgtgtacatagaaaaggactcaattgagtgttgatgta |
308 |
Q |
| |
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| ||| ||| ||||||||||||||||||||||| | ||| | |||||||| | | || || || | ||||||| ||||| |||| || | | |
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| T |
34475138 |
aacaccttgtctccaacctaggaactcccttgtgtagagggttttttaagcattgtcttacttttgcatcaagaaaagtactcatttgattggaagtttt |
34475237 |
T |
|
| Q |
309 |
ggaattgaggtgagagtatgtgaaatcaagtgcttcatctaatatatcttc |
359 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34475238 |
ggaattaaggtgagcatatgtgaaatcaagtgcttcatctaatatatcttc |
34475288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 109 - 359
Target Start/End: Original strand, 1594641 - 1594894
Alignment:
| Q |
109 |
agttctttttggtacatcttctgcatcatattgaaatctaattttgcaaaattcaaaataactttatcatgggaaggttcttcattgtatgaagaaatgt |
208 |
Q |
| |
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||||||||||| | ||| ||||| | ||| |||||||||||||||||||| || | || ||||||| ||||||||| ||||| | ||| ||||| |||| |
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| T |
1594641 |
agttctttttgatgcattttctgtagcatgttgaaatctaattttgcaaagtttagaagaactttactatgggaaggatcttcttcgtaggaagatatgt |
1594740 |
T |
|
| Q |
209 |
gataccatgtttccaacctaggaactcccttgtgaaaaggtgtatttaagcagcgacgtatttgtgtacatagaaaaggactcaattg---agtgttgat |
305 |
Q |
| |
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| T |
1594741 |
aactccttgtctccaacctaggaattcccttgtgtagaggtttcctcaagcattgtcttatttgtgcatcaagaaaaggactcaattggttagtattaat |
1594840 |
T |
|
| Q |
306 |
gtaggaattgaggtgagagtatgtgaaatcaagtgcttcatctaatatatcttc |
359 |
Q |
| |
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| |||||| ||||||| | ||||||| |||| |||||||||||||||||||| |
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|
| T |
1594841 |
tttggaattaaggtgagcatgtgtgaaaacaagcgcttcatctaatatatcttc |
1594894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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