View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0929_low_12 (Length: 400)
Name: NF0929_low_12
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 29 - 383
Target Start/End: Original strand, 14116803 - 14117160
Alignment:
| Q |
29 |
ataaactgtatcaattaccaaactattccaagagttaactcacaatgcaaaagatattgtttcgacaaaaacttaagtttcacatcaatcttgaatgtga |
128 |
Q |
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| T |
14116803 |
ataaactgtatcaattaccaaactattccaagagttaacttgcaatgcaaaagatattgtttcgacaaaaacttaagtttcacatcaatcttgagtgtga |
14116902 |
T |
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| Q |
129 |
agtaaggataaaaattcccagcattgttttactagatatccaagttggaccaagagttataatagatggaacatgcgtgagggagctattagatcctgac |
228 |
Q |
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| T |
14116903 |
agtaaggataaaaattcccagcattgttttactacatatccaagttggaccaaaagttataatagatggtacacgtgtgagggagctattagatcctgac |
14117002 |
T |
|
| Q |
229 |
cttacaa---accaccaccatcattcgcaagttcacaccgttcgatgaaaccagtggctttctctggtttatgtttcaaaccaagcgaaaaatgtgcccg |
325 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14117003 |
cttacaaaccaccaccaccatcattcgcgagttcacaccgttcgatgaaaccagtggctttctctggtttatgtttcaaactaagcgaaaaatgtgcccg |
14117102 |
T |
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| Q |
326 |
ttgcaatttcaaacgggcacaaccacgtcgtaaaccaatcaaaccataataatccaca |
383 |
Q |
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| T |
14117103 |
ttgcaatttcaaacgggtacaaccacgtcgtaaactaatcaaaccataataatccaca |
14117160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 47 - 249
Target Start/End: Complemental strand, 39111495 - 39111281
Alignment:
| Q |
47 |
caaactattccaagagttaactcaca------atgcaaaa-gatattgtttcgacaaaaacttaagtttcacatcaatcttgaatgtgaagtaaggataa |
139 |
Q |
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| T |
39111495 |
caaactattccaagagttaactcacacacaatatgcaaaaagatattgtttggacaaaaacttaaatttcacatcaatcttgagtgtgaagtaaggataa |
39111396 |
T |
|
| Q |
140 |
a-aattcccagcattgttttactag--atatccaagttggaccaagagttataatagatggaacatgcgtgagggagctatt-agatcctgaccttac-a |
234 |
Q |
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| |||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||| ||| | |||||||| ||| ||||||||||| | |
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| T |
39111395 |
agaattcccaccattgtttaactagacatatccaagttggaccaagagctataatagatggtacatgtgtgtgagagctattaagaccctgaccttacaa |
39111296 |
T |
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| Q |
235 |
aaccaccaccatcat |
249 |
Q |
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||||||||||||||| |
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| T |
39111295 |
aaccaccaccatcat |
39111281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 246 - 383
Target Start/End: Complemental strand, 39110409 - 39110272
Alignment:
| Q |
246 |
tcattcgcaagttcacaccgttcgatgaaaccagtggctttctctggtttatgtttcaaaccaagcgaaaaatgtgcccgttgcaatttcaaacgggcac |
345 |
Q |
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|||| ||| |||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||| ||| ||||||||||||||||| | ||||||||| |
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| T |
39110409 |
tcatccgcgagttcacaccgttcaatgaaaccaatagctttctctggtttatgtttcaaactaagcaaaagatgtgcccgttgcaattccgaacgggcac |
39110310 |
T |
|
| Q |
346 |
aaccacgtcgtaaaccaatcaaaccataataatccaca |
383 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||| |
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| T |
39110309 |
aaccacgtcttaaaccaatcaaaccataatagtccaca |
39110272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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