View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0929_low_13 (Length: 375)

Name: NF0929_low_13
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0929_low_13
NF0929_low_13
[»] chr5 (1 HSPs)
chr5 (28-361)||(36199276-36199609)
[»] chr7 (2 HSPs)
chr7 (92-352)||(28449405-28449665)
chr7 (189-244)||(12635951-12636006)
[»] chr1 (2 HSPs)
chr1 (97-356)||(48675085-48675344)
chr1 (184-257)||(41662527-41662600)
[»] chr2 (6 HSPs)
chr2 (192-295)||(410494-410600)
chr2 (185-240)||(996740-996795)
chr2 (157-243)||(821405-821491)
chr2 (183-243)||(973725-973785)
chr2 (189-243)||(1403805-1403859)
chr2 (68-125)||(821523-821579)
[»] chr3 (3 HSPs)
chr3 (193-239)||(43360019-43360065)
chr3 (189-243)||(45810203-45810257)
chr3 (74-121)||(45810090-45810135)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 28 - 361
Target Start/End: Complemental strand, 36199609 - 36199276
Alignment:
Q  28 caattttatggtagaatcttacgaaacaacggacatgaaagaaaactactacttacatatatcttatatgttatcaataaactgaaagttgacaagtttt 127  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199609 caattttatggtagaaacttacgaaacaacggacatgaaagaaaactactacttacatatatcttatatgttatcaataaactgaaagttgacaagtttt 36199510  T
Q  128 tgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtcactccatattgtcatagtttgtaaaactcttgcattatttagaata 227  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199509 tgatgccattggaattaaggatagttccttttctatttgaggttgttctttgtcactccatattgtcatagtttgtaaaactcttgcattatttagaata 36199410  T
Q  228 tatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcctgaatagtgcaagttctaagatataatgaaagaaattgtggagtggattttg 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199409 tatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcccgaatagtgcaagttctaagatataatgaaagaaattgtggagtggattttg 36199310  T
Q  328 gatccacccaactttcttgttcttttcctccttc 361  Q
    ||||||||||| ||||||||||||||||||||||    
T  36199309 gatccacccaattttcttgttcttttcctccttc 36199276  T

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Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 92 - 352
Target Start/End: Original strand, 28449405 - 28449665
Alignment:
Q  92 tatatgttatcaataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtcactccatatt 191  Q
    |||| ||||||||||||||||||||||||||||| | |||||| |||||  | |||||| |||| |||||||||||||||||||||| |||||||||||     
T  28449405 tatacgttatcaataaactgaaagttgacaagttgtggatgcccttggacatgaggataattccctttctatttgaggttgttctttatcactccatatc 28449504  T
Q  192 gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcctgaatagtgcaagttc 291  Q
     |||| ||||||||||||||||||||||| |||||||||||||||| ||||| ||| | ||||||||||||||| || |||||| ||||||||||||||     
T  28449505 atcatggtttgtaaaactcttgcattattaagaatatatcttgctagcataatgtcattttgtaggtctacaaatgcaaagtcccgaatagtgcaagttg 28449604  T
Q  292 taagatataatgaaagaaattgtggagtggattttggatccacccaactttcttgttcttt 352  Q
    |||||| |||||| ||  |||||||||  ||| |||| |  |||||||||| |||| ||||    
T  28449605 taagatgtaatgagaggcattgtggagcagatgttgggtttacccaactttgttgtccttt 28449665  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 12636006 - 12635951
Alignment:
Q  189 attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataag 244  Q
    |||||||| |||||||||||||||||||| || | |||||| ||||||| ||||||    
T  12636006 attgtcatggtttgtaaaactcttgcattcttcaaaatataccttgctagcataag 12635951  T

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Target: chr1 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 97 - 356
Target Start/End: Original strand, 48675085 - 48675344
Alignment:
Q  97 gttatcaataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtcactccatattgtcat 196  Q
    ||||||||||||||||||||||||| |||   || ||| |||||  | |||||| |||| |||||||||||||||| || ||||| ||||||||||||||    
T  48675085 gttatcaataaactgaaagttgacatgttgcagaggcccttggacatgaggataattccctttctatttgaggttggtccttgtcgctccatattgtcat 48675184  T
Q  197 agtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcctgaatagtgcaagttctaaga 296  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  |  || ||||||||   ||| |  |||||| |||||||||| |||||||||    
T  48675185 agtttgtaaaacttttgcattatttagaatatatcttgctaacataatattatgctgtaggtcactaaaggtaaagtcccgaatagtgcaggttctaaga 48675284  T
Q  297 tataatgaaagaaattgtggagtggattttggatccacccaactttcttgttcttttcct 356  Q
     |||||  |||  ||||||||| | | || || |||||||||||||||||||||| ||||    
T  48675285 gataattgaaggcattgtggagggaacttagggtccacccaactttcttgttcttgtcct 48675344  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 41662527 - 41662600
Alignment:
Q  184 tccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtagg 257  Q
    |||| ||| |||| |||||||||||||||||||| || | || ||| ||||||| |||||| |||| |||||||    
T  41662527 tccagattttcatggtttgtaaaactcttgcattcttcaaaacataccttgctagcataagctcgtcttgtagg 41662600  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 295
Target Start/End: Complemental strand, 410600 - 410494
Alignment:
Q  192 gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggt---cgtgttgtaggtctacaaaagcgaagtcctgaatagtgcaag 288  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||||||| ||     ||||||||| || |||| ||||||||| ||||||||||||    
T  410600 gtcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaatagtgcaag 410501  T
Q  289 ttctaag 295  Q
    || ||||    
T  410500 ttgtaag 410494  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 996740 - 996795
Alignment:
Q  185 ccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaaca 240  Q
    ||||||| |||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  996740 ccatattttcatggtttgtaaaagtcttgcattctttagaatatatcttgctaaca 996795  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 821491 - 821405
Alignment:
Q  157 tttctatttgaggttgttctttgtcactccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 243  Q
    ||||||||| || |||||  ||||  ||||| ||||||||||||| ||||||||| ||||| || |||||| || ||||||||||||    
T  821491 tttctatttcagattgtttattgttgctccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataa 821405  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 973725 - 973785
Alignment:
Q  183 ctccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 243  Q
    ||||| ||| |||||||||||||||||||||| || |  |||||| |||||||||||||||    
T  973725 ctccagattttcatagtttgtaaaactcttgcgttctccagaataaatcttgctaacataa 973785  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 1403859 - 1403805
Alignment:
Q  189 attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 243  Q
    |||| |||||||| |||||||||||||||||  |||||| | |||||||||||||    
T  1403859 attgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataa 1403805  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 821579 - 821523
Alignment:
Q  68 gaaaactactacttacatatatcttatatgttatcaataaactgaaagttgacaagtt 125  Q
    ||||| || |||||||||| ||| ||||||||||||||||| |||||||||||| |||    
T  821579 gaaaaataatacttacata-atcgtatatgttatcaataaaatgaaagttgacatgtt 821523  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 43360065 - 43360019
Alignment:
Q  193 tcatagtttgtaaaactcttgcattatttagaatatatcttgctaac 239  Q
    |||||||||| ||||||||||||||||| ||||| ||| ||||||||    
T  43360065 tcatagtttgcaaaactcttgcattattaagaatgtatgttgctaac 43360019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 45810203 - 45810257
Alignment:
Q  189 attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 243  Q
    ||||||||||||| ||||||| ||||||| || |||||| | |||||||||||||    
T  45810203 attgtcatagtttctaaaacttttgcattcttcagaataaaccttgctaacataa 45810257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 45810090 - 45810135
Alignment:
Q  74 tactacttacatatatcttatatgttatcaataaactgaaagttgaca 121  Q
    ||||||||||||||  | ||||||||||||||||| ||||||||||||    
T  45810090 tactacttacatat--catatatgttatcaataaattgaaagttgaca 45810135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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