View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0929_low_17 (Length: 358)

Name: NF0929_low_17
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0929_low_17
NF0929_low_17
[»] chr8 (5 HSPs)
chr8 (96-358)||(454488-454747)
chr8 (96-264)||(18867235-18867403)
chr8 (96-264)||(35743743-35743911)
chr8 (96-264)||(10685829-10685997)
chr8 (150-267)||(26299724-26299841)
[»] chr4 (3 HSPs)
chr4 (99-267)||(16625561-16625729)
chr4 (137-267)||(5146259-5146389)
chr4 (96-264)||(9225969-9226137)
[»] chr7 (7 HSPs)
chr7 (99-267)||(49090039-49090207)
chr7 (137-267)||(9186751-9186881)
chr7 (99-257)||(18412019-18412177)
chr7 (96-264)||(16883281-16883449)
chr7 (96-257)||(21644398-21644559)
chr7 (96-264)||(24262888-24263056)
chr7 (137-256)||(21987282-21987401)
[»] chr5 (7 HSPs)
chr5 (96-264)||(33789710-33789878)
chr5 (137-272)||(24557190-24557325)
chr5 (137-272)||(24598222-24598357)
chr5 (96-264)||(31398557-31398725)
chr5 (137-264)||(27448177-27448304)
chr5 (152-264)||(43595475-43595587)
chr5 (152-264)||(43628269-43628381)
[»] chr3 (7 HSPs)
chr3 (137-267)||(3325142-3325274)
chr3 (99-267)||(1309222-1309390)
chr3 (137-267)||(16262713-16262843)
chr3 (96-264)||(8515448-8515616)
chr3 (96-264)||(32478694-32478862)
chr3 (96-257)||(2673785-2673946)
chr3 (138-263)||(28490780-28490905)
[»] chr2 (2 HSPs)
chr2 (96-264)||(19347632-19347800)
chr2 (137-257)||(25394247-25394367)
[»] chr1 (2 HSPs)
chr1 (137-267)||(47100424-47100554)
chr1 (96-264)||(41396593-41396761)
[»] scaffold0197 (1 HSPs)
scaffold0197 (96-264)||(15874-16042)
[»] chr6 (1 HSPs)
chr6 (96-257)||(14739137-14739298)
[»] scaffold0006 (2 HSPs)
scaffold0006 (137-257)||(869-989)
scaffold0006 (137-257)||(9025-9145)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 96 - 358
Target Start/End: Original strand, 454488 - 454747
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  454488 catctcataataaatttgaattgtggcatttaaggtgacaacatgttagtgaaagaggtttagtagaactagccaaacaaggttttttaggaagagaaaa 454587  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtggtatacatttggatttttggattcttctttag 295  Q
    ||| ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  454588 tttggataagctagaatttcgcaatcattgcatactagacaaacaacatagagtgaagtttgaaagtggtatacattcggatttttggattcttctttag 454687  T
Q  296 atacttaatcacgggggatatactccccctctcgtgaacttttctccatctcttcatattcac 358  Q
    ||||||| |||| |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  454688 atacttactcac-ggggatatact--ccctctcgtgaacttttctccatctcttcatattcac 454747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 264
Target Start/End: Original strand, 18867235 - 18867403
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  ||||     ||||| |||||||| |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  18867235 catctcataataattctgaattgtggcatttgaggttggggcatgttagtgaaaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 18867334  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 264  Q
     || || |||||||||||| |  | |||| ||||||||  ||| ||||||| |||||||||| ||||||    
T  18867335 attggacaagctagaattttgtgagcattgcatactaggaaaacaacatagggtgaagtttggaagtgg 18867403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 264
Target Start/End: Complemental strand, 35743911 - 35743743
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  35743911 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 35743812  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 264  Q
     || ||||||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  35743811 attggataagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 35743743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 264
Target Start/End: Original strand, 10685829 - 10685997
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  10685829 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 10685928  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 264  Q
     || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  10685929 attggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 10685997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 267
Target Start/End: Complemental strand, 26299841 - 26299724
Alignment:
Q  150 gaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagacaaataacatagagt 249  Q
    |||||||||| ||| |||||||||||| |||  |||||| ||| || || || |||||||||||| |  | |||| |||||||| |||  |||||| |||    
T  26299841 gaggtttagttgaattagcaaaacaaggtttgataggaaaagataaattggacaagctagaattttgtgagcattgcatactaggcaagcaacataaagt 26299742  T
Q  250 gaagtttgaaagtggtat 267  Q
     |||||||  ||||||||    
T  26299741 aaagtttggtagtggtat 26299724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 99 - 267
Target Start/End: Original strand, 16625561 - 16625729
Alignment:
Q  99 ctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaattt 198  Q
    |||||||||| |||||||||||||||| ||| |     ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || ||    
T  16625561 ctcataataattttgaattgtggcatttaagattggggcatgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaatt 16625660  T
Q  199 agataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtggtat 267  Q
     || |||||||||||| |  | |||| |||||||| |||  |||||||||| |||||||  ||||||||    
T  16625661 ggacaagctagaattttgtgagcattgcatactaggcaagcaacatagagtaaagtttggtagtggtat 16625729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 267
Target Start/End: Complemental strand, 5146389 - 5146259
Alignment:
Q  137 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 236  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||  ||  || ||| || || || ||| |||||||| |  | |||| |||||||| ||    
T  5146389 catgttagtgaaagaggtttagttgaactagctaaacaagatttgctaaaaaaagataaattggacaagttagaattttgtgagcattgcatactaggca 5146290  T
Q  237 aataacatagagtgaagtttgaaagtggtat 267  Q
    |  |||||||||| |||||||  ||||||||    
T  5146289 agcaacatagagtaaagtttggtagtggtat 5146259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 264
Target Start/End: Original strand, 9225969 - 9226137
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  9225969 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 9226068  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 264  Q
     ||  | |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  9226069 attgaacaagctagaattttgtgagcattgcatactaggcaaacaacatagggtgaagtttggaagtgg 9226137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 267
Target Start/End: Complemental strand, 49090207 - 49090039
Alignment:
Q  99 ctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaattt 198  Q
    |||||||||| | ||||||||||||||  || |   | ||||| ||||||||||||||||| |||||| | ||||||| |||  |||||| ||| || ||    
T  49090207 ctcataataattctgaattgtggcatttgagattggagcatgttagtgaaagaggtttagttgaactaactaaacaaggtttgctaggaaaagataaatt 49090108  T
Q  199 agataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtggtat 267  Q
     || |||||||||||| | || |||| |||||||| |||  |||||||||| |||||||  ||||||||    
T  49090107 ggacaagctagaattttgtaagcattgcatactaggcaagcaacatagagtaaagtttggtagtggtat 49090039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 267
Target Start/End: Original strand, 9186751 - 9186881
Alignment:
Q  137 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 236  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||| ||| || ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  9186751 catgttagtgaaagaggtttagttgaactagctaaacaaggttttctagtaaaagataaattggacaagctagaattttgtgagcattgcatactaggca 9186850  T
Q  237 aataacatagagtgaagtttgaaagtggtat 267  Q
    |  |||||||||| |||||||  ||||||||    
T  9186851 agcaacatagagtaaagtttggtagtggtat 9186881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 257
Target Start/End: Complemental strand, 18412177 - 18412019
Alignment:
Q  99 ctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaattt 198  Q
    |||||||||| | ||||||||||||||  ||||     ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || ||    
T  18412177 ctcataataattctgaattgtggcatttgaggttggggcatgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaatt 18412078  T
Q  199 agataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttg 257  Q
     || |||||||||||| |  | |||| |||||||| |||  |||||||||| |||||||    
T  18412077 ggacaagctagaattttgtgagcattgcatactaggcaagcaacatagagtaaagtttg 18412019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 264
Target Start/End: Complemental strand, 16883449 - 16883281
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  16883449 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 16883350  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 264  Q
     || ||||||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  16883349 attggataagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 16883281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 257
Target Start/End: Complemental strand, 21644559 - 21644398
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  ||||     ||||| |||||||||| |||||| |||||||| |||||||||||  |||| | ||| ||    
T  21644559 catctcataataattctgaattgtggcatttgaggttggggcatgttagtgaaagagatttagttgaactagctaaacaagatttgctagggaaagataa 21644460  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttg 257  Q
     || || |||||||||||| |  | || | |||||||| |||  |||||| |||||||||||    
T  21644459 attggacaagctagaattttgtgagcaatgcatactaggcaagcaacatatagtgaagtttg 21644398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 264
Target Start/End: Original strand, 24262888 - 24263056
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  24262888 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 24262987  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 264  Q
     || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  24262988 attggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 24263056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 256
Target Start/End: Complemental strand, 21987401 - 21987282
Alignment:
Q  137 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 236  Q
    ||||| |||||||||||||||||  ||||||| ||||||| |||  |||||| ||| |  || || |||||||||||| | || |||| |||||||| ||    
T  21987401 catgttagtgaaagaggtttagttaaactagctaaacaaggtttgctaggaaaagatacattggacaagctagaattttgtaagcattgcatactaggca 21987302  T
Q  237 aataacatagagtgaagttt 256  Q
    || ||| |||||| ||||||    
T  21987301 aacaacgtagagtaaagttt 21987282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 264
Target Start/End: Complemental strand, 33789878 - 33789710
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  33789878 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 33789779  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 264  Q
     || ||||||||||||||| | || |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  33789778 attggataagctagaattttgtaaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 33789710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 272
Target Start/End: Original strand, 24557190 - 24557325
Alignment:
Q  137 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 236  Q
    ||||| |||||||||| |||||| |||||||| ||||||| |||  |||||| ||| || ||||| |||||||||||| |  | |||| ||||||||  |    
T  24557190 catgttagtgaaagagatttagttgaactagctaaacaaggtttgctaggaaaagataaattagacaagctagaattttgtgagcattgcatactaggaa 24557289  T
Q  237 aataacatagagtgaagtttgaaagtggtatacatt 272  Q
    |  ||||||| || |||||||| |||||||| ||||    
T  24557290 agcaacatagggtcaagtttgatagtggtatgcatt 24557325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 272
Target Start/End: Original strand, 24598222 - 24598357
Alignment:
Q  137 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 236  Q
    ||||| |||||||||| |||||| |||||||| ||||||| |||  |||||| ||| || ||||| |||||||||||| |  | |||| ||||||||  |    
T  24598222 catgttagtgaaagagatttagttgaactagctaaacaaggtttgctaggaaaagataaattagacaagctagaattttgtgagcattgcatactaggaa 24598321  T
Q  237 aataacatagagtgaagtttgaaagtggtatacatt 272  Q
    |  ||||||| || |||||||| |||||||| ||||    
T  24598322 agcaacatagggtcaagtttgatagtggtatgcatt 24598357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 264
Target Start/End: Original strand, 31398557 - 31398725
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  31398557 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 31398656  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 264  Q
     || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  31398657 attggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 31398725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 264
Target Start/End: Complemental strand, 27448304 - 27448177
Alignment:
Q  137 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 236  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  27448304 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgagcattgcatactaggca 27448205  T
Q  237 aataacatagagtgaagtttgaaagtgg 264  Q
    || ||||||| |||||||||| ||||||    
T  27448204 aacaacatagggtgaagtttggaagtgg 27448177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 264
Target Start/End: Complemental strand, 43595587 - 43595475
Alignment:
Q  152 ggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagacaaataacatagagtga 251  Q
    |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||  |||| ||||||| ||||    
T  43595587 ggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgagcattgcatactaagcaaacaacatagggtga 43595488  T
Q  252 agtttgaaagtgg 264  Q
    |||||| ||||||    
T  43595487 agtttggaagtgg 43595475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 264
Target Start/End: Complemental strand, 43628381 - 43628269
Alignment:
Q  152 ggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagacaaataacatagagtga 251  Q
    |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||  |||| ||||||| ||||    
T  43628381 ggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgagcattgcatactaagcaaacaacatagggtga 43628282  T
Q  252 agtttgaaagtgg 264  Q
    |||||| ||||||    
T  43628281 agtttggaagtgg 43628269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 267
Target Start/End: Original strand, 3325142 - 3325274
Alignment:
Q  137 catgtcagtgaaagaggttta--gtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactaga 234  Q
    ||||| |||||||||||||||  || |||||||| ||||||||||| ||||||| ||| || || || |||||||||||| |  | |||| ||||||||     
T  3325142 catgttagtgaaagaggtttatagttgaactagctaaacaagatttgttaggaaaagataaattggacaagctagaattttgtgagcattgcatactagg 3325241  T
Q  235 caaataacatagagtgaagtttgaaagtggtat 267  Q
    |||  |||||||||| |||||||  ||||||||    
T  3325242 caagcaacatagagtaaagtttggtagtggtat 3325274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 267
Target Start/End: Complemental strand, 1309390 - 1309222
Alignment:
Q  99 ctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaattt 198  Q
    |||||||||| | ||||||||||||||  ||||     ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || ||    
T  1309390 ctcataataattctgaattgtggcatttgaggttgaggcatgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaatt 1309291  T
Q  199 agataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtggtat 267  Q
     || |||||||||||| |  | |||| ||||||||  ||  |||||||||| |||||||  ||||||||    
T  1309290 ggacaagctagaattttgtgagcattgcatactaggaaagcaacatagagtaaagtttggtagtggtat 1309222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 267
Target Start/End: Complemental strand, 16262843 - 16262713
Alignment:
Q  137 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 236  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||| |||||| | | || || || |||||||||||| |  | |||| |||||||| ||    
T  16262843 catgttagtgaaagaggtttagttgaactagccaaacaaggttttctaggaaaaaataaattggacaagctagaattttgtgagcattgcatactaggca 16262744  T
Q  237 aataacatagagtgaagtttgaaagtggtat 267  Q
       |||||||||| |||||||  ||||||||    
T  16262743 ggcaacatagagtaaagtttggtagtggtat 16262713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 264
Target Start/End: Complemental strand, 8515616 - 8515448
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  8515616 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 8515517  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 264  Q
     || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  8515516 attggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 8515448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 264
Target Start/End: Complemental strand, 32478862 - 32478694
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  32478862 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 32478763  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 264  Q
     || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  32478762 attggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 32478694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 257
Target Start/End: Original strand, 2673785 - 2673946
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  2673785 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 2673884  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttg 257  Q
     || || |||||||||||| |  | |||| |||||||| |||| ||||||| ||||||||||    
T  2673885 attggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttg 2673946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 28490780 - 28490905
Alignment:
Q  138 atgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagacaa 237  Q
    |||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || ||  | |||||||||||| |  | |||| |||||||| |||    
T  28490780 atgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattgtacaagctagaattttgtgagcattgcatactaggcaa 28490879  T
Q  238 ataacatagagtgaagtttgaaagtg 263  Q
    | ||||||| |||||||||| |||||    
T  28490880 acaacatagggtgaagtttggaagtg 28490905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 264
Target Start/End: Complemental strand, 19347800 - 19347632
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  19347800 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 19347701  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 264  Q
     || ||||||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  19347700 attggataagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 19347632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 257
Target Start/End: Complemental strand, 25394367 - 25394247
Alignment:
Q  137 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 236  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || || || |||||||||||| || | |||| ||| |||| ||    
T  25394367 catgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaattggacaagctagaattttgcgagcattgcatgctaggca 25394268  T
Q  237 aataacatagagtgaagtttg 257  Q
    |  |||||||||| |||||||    
T  25394267 agcaacatagagtaaagtttg 25394247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 267
Target Start/End: Original strand, 47100424 - 47100554
Alignment:
Q  137 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 236  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || || || |||||||||||| |  | |||| |||| ||| ||    
T  47100424 catgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaattggacaagctagaattttgtgaacattgcatattaggca 47100523  T
Q  237 aataacatagagtgaagtttgaaagtggtat 267  Q
    |  |||||||||| |||||||  ||||||||    
T  47100524 agcaacatagagtaaagtttggtagtggtat 47100554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 264
Target Start/End: Complemental strand, 41396761 - 41396593
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  41396761 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 41396662  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 264  Q
     || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  41396661 attggacaagctagaattttgtgagcattgcatactaggcaaacaacatagggtgaagtttggaagtgg 41396593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 264
Target Start/End: Original strand, 15874 - 16042
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  15874 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 15973  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 264  Q
     || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  15974 attggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 16042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 257
Target Start/End: Original strand, 14739137 - 14739298
Alignment:
Q  96 catctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaa 195  Q
    ||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| ||    
T  14739137 catctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataa 14739236  T
Q  196 tttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttg 257  Q
     || || |||||||||||| |  | |||| |||||||| |||| ||||||| ||||||||||    
T  14739237 attggacaagctagaattttgtgagcattgcatactaggcaaacaacatagggtgaagtttg 14739298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 257
Target Start/End: Complemental strand, 989 - 869
Alignment:
Q  137 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 236  Q
    ||||| ||||||||||||||||| |||||||| ||||| | |||  |||||| ||| || || || |||||||||||| |  | |||| |||||||  ||    
T  989 catgttagtgaaagaggtttagttgaactagctaaacagggtttgctaggaaaagataaattggacaagctagaattttgtgagcattgcatactaagca 890  T
Q  237 aataacatagagtgaagtttg 257  Q
    |  |||||||||| |||||||    
T  889 agaaacatagagtaaagtttg 869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 257
Target Start/End: Complemental strand, 9145 - 9025
Alignment:
Q  137 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 236  Q
    ||||| ||||||||||||||||| |||||||| ||||| | |||  |||||| ||| || || || |||||||||||| |  | |||| |||||||  ||    
T  9145 catgttagtgaaagaggtttagttgaactagctaaacagggtttgctaggaaaagataaattggacaagctagaattttgtgagcattgcatactaagca 9046  T
Q  237 aataacatagagtgaagtttg 257  Q
    |  |||||||||| |||||||    
T  9045 agaaacatagagtaaagtttg 9025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 550 times since January 2019
Visitors: 6704