View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0929_low_18 (Length: 347)
Name: NF0929_low_18
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 334
Target Start/End: Complemental strand, 4713086 - 4712759
Alignment:
| Q |
7 |
tccaataatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4713086 |
tccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat |
4712987 |
T |
|
| Q |
107 |
taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712986 |
taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc |
4712887 |
T |
|
| Q |
207 |
atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712886 |
atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaa |
4712787 |
T |
|
| Q |
307 |
cccaatttacgacgttttatcgcaacag |
334 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4712786 |
cccaatttacgacgttttatcgcaacag |
4712759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 334
Target Start/End: Complemental strand, 4847041 - 4846714
Alignment:
| Q |
7 |
tccaataatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat |
106 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| | |
|
|
| T |
4847041 |
tccaacaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct |
4846942 |
T |
|
| Q |
107 |
taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| ||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
4846941 |
cgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagtaccacgttgcatgaagtcataaactagaatcatctctgc |
4846842 |
T |
|
| Q |
207 |
atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaa |
306 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4846841 |
atcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttatcgagaa |
4846742 |
T |
|
| Q |
307 |
cccaatttacgacgttttatcgcaacag |
334 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
4846741 |
cccggtttacgacgttttatcgcaacag |
4846714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 4698204 - 4697908
Alignment:
| Q |
13 |
aatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatattaagtc |
112 |
Q |
| |
|
||||| || |||||||| || ||||||||||||||||| |||||||||||| ||||||||||||| | || |||||||| | |||||||| | |||| |
|
|
| T |
4698204 |
aatatgttggtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgaagataatgtaggcctcttgctgcccccaatagaatctcgagtc |
4698105 |
T |
|
| Q |
113 |
tttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttc |
212 |
Q |
| |
|
| | ||||| |||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| |||| |
|
|
| T |
4698104 |
tcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatctctgcaccttc |
4698005 |
T |
|
| Q |
213 |
attgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaaccc |
309 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| || |||| ||||||| |||||||| |
|
|
| T |
4698004 |
gttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccttgttgagaaccc |
4697908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 4862985 - 4863312
Alignment:
| Q |
7 |
tccaataatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat |
106 |
Q |
| |
|
||||| ||||| || |||||||| |||||||||||||||||||| ||||| |||| ||||||||||||| || ||||||||||| | || ||||| | |
|
|
| T |
4862985 |
tccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatct |
4863084 |
T |
|
| Q |
107 |
taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc |
206 |
Q |
| |
|
|||||| | ||||| |||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||| ||||||||||| ||||||||||| | |
|
|
| T |
4863085 |
caagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctc |
4863184 |
T |
|
| Q |
207 |
atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaa |
306 |
Q |
| |
|
| |||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
4863185 |
accttcgttgcaatatccaatgagagaaaccaagtgaatatgacgaagctgagagagtaattcgatctcattcatgaactcatttataccttgttgagaa |
4863284 |
T |
|
| Q |
307 |
cccaatttacgacgttttatcgcaacag |
334 |
Q |
| |
|
|| |||| |||||||||||||||||| |
|
|
| T |
4863285 |
cctggtttaagacgttttatcgcaacag |
4863312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 4784855 - 4784530
Alignment:
| Q |
7 |
tccaataatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat |
106 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||| |||| || |||| ||||||||| | |
|
|
| T |
4784855 |
tccaacaatatgtttgtactcttcacgtcacggtgtatgatattgtgcttcgcacctgcatgcagataatgcaacccccgcgcggcacctaatagaatct |
4784756 |
T |
|
| Q |
107 |
taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc |
206 |
Q |
| |
|
||| || || ||||| ||||||||| |||||| || ||||| |||| ||||| ||| ||||| ||| ||| ||||||||||| |||||||||||| | |
|
|
| T |
4784755 |
caagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatctctac |
4784656 |
T |
|
| Q |
207 |
atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaa |
306 |
Q |
| |
|
| ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| || ||||||| ||| || || | ||||||| ||||| |
|
|
| T |
4784655 |
accttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaactcgttcacaccttgttgagaa |
4784556 |
T |
|
| Q |
307 |
cccaatttacgacgttttatcgcaac |
332 |
Q |
| |
|
|| |||| |||||||||||||||| |
|
|
| T |
4784555 |
cctggtttaagacgttttatcgcaac |
4784530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 4817284 - 4816959
Alignment:
| Q |
7 |
tccaataatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat |
106 |
Q |
| |
|
||||| ||||| ||||||||||| || ||||||||||||||||| |||||||||||| |||| | ||||||||| |||| || |||| ||||||||| | |
|
|
| T |
4817284 |
tccaacaatatgtttgtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgcaaataatgcaacccccgcgcggcacctaatagaatct |
4817185 |
T |
|
| Q |
107 |
taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc |
206 |
Q |
| |
|
||| || || ||||| ||||||||| |||||| || ||||| |||| ||||| ||| ||||| ||| ||| ||||||||||| |||||||||||| | |
|
|
| T |
4817184 |
caagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatctctac |
4817085 |
T |
|
| Q |
207 |
atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaa |
306 |
Q |
| |
|
| ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| || ||||||| ||| || || | ||||||| ||||| |
|
|
| T |
4817084 |
accttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaactcgttaacaccttgttgagaa |
4816985 |
T |
|
| Q |
307 |
cccaatttacgacgttttatcgcaac |
332 |
Q |
| |
|
|| |||| |||||||||||||||| |
|
|
| T |
4816984 |
ccaggtttaagacgttttatcgcaac |
4816959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 4642977 - 4643077
Alignment:
| Q |
184 |
tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga |
283 |
Q |
| |
|
|||||||| | ||||||||||| || || ||||||||||| | |||||| || |||||||| || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
4642977 |
tcataaaccaaaatcatctctgtgtcatcgttgcaatatcccacgagggacaccaagtgaatgtggcgaagctgggagagcaactcgatttcattcatga |
4643076 |
T |
|
| Q |
284 |
a |
284 |
Q |
| |
|
| |
|
|
| T |
4643077 |
a |
4643077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 4666208 - 4666308
Alignment:
| Q |
184 |
tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga |
283 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||||| | ||||| || |||||||| || ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
4666208 |
tcataaaccagaatcatctctgtgtcgtcattgcaatatcccacaagggataccaagtgaatgtggcgaagctgagagagcaattcgatttcgttcatga |
4666307 |
T |
|
| Q |
284 |
a |
284 |
Q |
| |
|
| |
|
|
| T |
4666308 |
a |
4666308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 334
Target Start/End: Original strand, 4630182 - 4630332
Alignment:
| Q |
184 |
tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga |
283 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||||||||| | ||||| || |||||||| || |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
4630182 |
tcataaaccagaatcatctctgtgttgtcattgcaatatcctacaagggacaccaagtgaatgtggcgaagctgggagagcaactcgatttcgttcatga |
4630281 |
T |
|
| Q |
284 |
attcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacag |
334 |
Q |
| |
|
| || || ||||||| |||| || |||| | |||||||||||||||| |
|
|
| T |
4630282 |
actcgttggcaccttgttgagagcctgatttgaggcgttttatcgcaacag |
4630332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 333
Target Start/End: Original strand, 4661077 - 4661226
Alignment:
| Q |
184 |
tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga |
283 |
Q |
| |
|
|||||||| |||||||||| || | ||||| |||||||| |||||||| || || ||||| || |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
4661077 |
tcataaaccagaatcatctatgtgttgtcattacaatatcccatgagggacaccaaatgaatgtggcgaagctgggagagcaactcgatttcgttcatga |
4661176 |
T |
|
| Q |
284 |
attcatttagaccttgtcgagaacccaatttacgacgttttatcgcaaca |
333 |
Q |
| |
|
| || || | ||||||| |||| ||| |||| | ||||| ||||||||| |
|
|
| T |
4661177 |
actcgttgacaccttgttgagagcccgatttgaggcgtttaatcgcaaca |
4661226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 334
Target Start/End: Original strand, 4652751 - 4652943
Alignment:
| Q |
142 |
gaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagt |
241 |
Q |
| |
|
|||||||| |||| |||| ||||| || |||| ||| || |||||||| | |||||| |||| || |||||||||||||| | |||||| || |||| |
|
|
| T |
4652751 |
gaaccataaagatactcacacagagtaccgtgttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagt |
4652850 |
T |
|
| Q |
242 |
gaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacag |
334 |
Q |
| |
|
|||| || |||||||| ||||| |||||||| ||||||||||| || || ||||||| |||| || |||| | |||||||||||||||| |
|
|
| T |
4652851 |
gaatgtggcgaagctgggagagtaactcgatctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacag |
4652943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 4636130 - 4636251
Alignment:
| Q |
184 |
tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga |
283 |
Q |
| |
|
||||| || ||||||||||||| | || ||||||||||| | ||||| || |||||||| || |||||||| |||||||||||||| || ||||||| |
|
|
| T |
4636130 |
tcatagaccagaatcatctctgtcttgtcgttgcaatatcccacaagggataccaagtgaatgtggcgaagctgggagagcaactcgatctcgttcatga |
4636229 |
T |
|
| Q |
284 |
attcatttagaccttgtcgaga |
305 |
Q |
| |
|
| |||||| ||||||| |||| |
|
|
| T |
4636230 |
actcatttgcaccttgttgaga |
4636251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 4671945 - 4672013
Alignment:
| Q |
216 |
gcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaa |
284 |
Q |
| |
|
||||||||||| |||||| || |||||||| || ||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
4671945 |
gcaatatccaacgagggataccaagtgaatgtggcgaagttgagagagtaactcgatttcgttcatgaa |
4672013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 332
Target Start/End: Complemental strand, 5479396 - 5479305
Alignment:
| Q |
241 |
tgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaacccaatttacgacgttttatcgcaac |
332 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| ||||| |||||| ||||||| | |||||| |||| | |||||||| ||||| |
|
|
| T |
5479396 |
tgaatatgacgaagcttcgagagcatgtcgatttcattgatgaactcattttcaccttgttgtgaacccggtttaagccgttttattgcaac |
5479305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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