View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0929_low_19 (Length: 347)

Name: NF0929_low_19
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0929_low_19
NF0929_low_19
[»] chr7 (13 HSPs)
chr7 (7-334)||(4712759-4713086)
chr7 (7-334)||(4846714-4847041)
chr7 (10-309)||(4697908-4698207)
chr7 (7-334)||(4862985-4863312)
chr7 (7-332)||(4784530-4784855)
chr7 (7-332)||(4816959-4817284)
chr7 (7-284)||(4642800-4643077)
chr7 (184-284)||(4666208-4666308)
chr7 (184-334)||(4630182-4630332)
chr7 (184-333)||(4661077-4661226)
chr7 (142-334)||(4652751-4652943)
chr7 (184-305)||(4636130-4636251)
chr7 (216-284)||(4671945-4672013)
[»] chr6 (1 HSPs)
chr6 (241-332)||(5479305-5479396)


Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 334
Target Start/End: Complemental strand, 4713086 - 4712759
Alignment:
Q  7 tccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713086 tccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat 4712987  T
Q  107 taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712986 taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc 4712887  T
Q  207 atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712886 atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaa 4712787  T
Q  307 cccaatttacgacgttttatcgcaacag 334  Q
    ||||||||||||||||||||||||||||    
T  4712786 cccaatttacgacgttttatcgcaacag 4712759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 334
Target Start/End: Complemental strand, 4847041 - 4846714
Alignment:
Q  7 tccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat 106  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |    
T  4847041 tccaacaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct 4846942  T
Q  107 taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc 206  Q
      |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| ||| ||| ||||||||||| ||||||||||||||    
T  4846941 cgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagtaccacgttgcatgaagtcataaactagaatcatctctgc 4846842  T
Q  207 atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaa 306  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  4846841 atcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttatcgagaa 4846742  T
Q  307 cccaatttacgacgttttatcgcaacag 334  Q
    |||  |||||||||||||||||||||||    
T  4846741 cccggtttacgacgttttatcgcaacag 4846714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 4698207 - 4697908
Alignment:
Q  10 aacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatattaa 109  Q
    |||||||| || |||||||| || ||||||||||||||||| |||||||||||| ||||||||||||| |  || |||||||| |  |||||||| |  |    
T  4698207 aacaatatgttggtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgaagataatgtaggcctcttgctgcccccaatagaatctcga 4698108  T
Q  110 gtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatc 209  Q
    |||| |  |||||  |||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| |    
T  4698107 gtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatctctgcacc 4698008  T
Q  210 ttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaaccc 309  Q
    ||| ||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| || |||| ||||||| ||||||||    
T  4698007 ttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccttgttgagaaccc 4697908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 4862985 - 4863312
Alignment:
Q  7 tccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat 106  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||||  ||||  ||||||||||||| || ||||||||||| |  || ||||| |    
T  4862985 tccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatct 4863084  T
Q  107 taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc 206  Q
     |||||| |  |||||  |||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||| ||||||||||| |||||||||||  |    
T  4863085 caagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctc 4863184  T
Q  207 atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaa 306  Q
    | |||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||||||| ||||||| |||||    
T  4863185 accttcgttgcaatatccaatgagagaaaccaagtgaatatgacgaagctgagagagtaattcgatctcattcatgaactcatttataccttgttgagaa 4863284  T
Q  307 cccaatttacgacgttttatcgcaacag 334  Q
    ||   |||| ||||||||||||||||||    
T  4863285 cctggtttaagacgttttatcgcaacag 4863312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 4784855 - 4784530
Alignment:
Q  7 tccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat 106  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||  || |||| ||||||||| |    
T  4784855 tccaacaatatgtttgtactcttcacgtcacggtgtatgatattgtgcttcgcacctgcatgcagataatgcaacccccgcgcggcacctaatagaatct 4784756  T
Q  107 taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc 206  Q
     ||| || || |||||  ||||||||| |||||| || ||||| |||| |||||  ||| ||||| ||| ||| ||||||||||| |||||||||||| |    
T  4784755 caagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatctctac 4784656  T
Q  207 atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaa 306  Q
    | ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| || ||||||| ||| || || | ||||||| |||||    
T  4784655 accttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaactcgttcacaccttgttgagaa 4784556  T
Q  307 cccaatttacgacgttttatcgcaac 332  Q
    ||   |||| ||||||||||||||||    
T  4784555 cctggtttaagacgttttatcgcaac 4784530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 4817284 - 4816959
Alignment:
Q  7 tccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat 106  Q
    ||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||| |||| | ||||||||| ||||  || |||| ||||||||| |    
T  4817284 tccaacaatatgtttgtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgcaaataatgcaacccccgcgcggcacctaatagaatct 4817185  T
Q  107 taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc 206  Q
     ||| || || |||||  ||||||||| |||||| || ||||| |||| |||||  ||| ||||| ||| ||| ||||||||||| |||||||||||| |    
T  4817184 caagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatctctac 4817085  T
Q  207 atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaa 306  Q
    | ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| || ||||||| ||| || || | ||||||| |||||    
T  4817084 accttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaactcgttaacaccttgttgagaa 4816985  T
Q  307 cccaatttacgacgttttatcgcaac 332  Q
    ||   |||| ||||||||||||||||    
T  4816984 ccaggtttaagacgttttatcgcaac 4816959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 4642800 - 4643077
Alignment:
Q  7 tccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat 106  Q
    ||||||||||| || || ||||| |||||||| ||||| || || |||||| |  |  |||||||||||| ||  || ||||| |||| ||||||||| |    
T  4642800 tccaacaatatgttggtgctcttcacgtcacgatgtattattttgtgcttcacctcagcatgaagataattcagccctcttgcggcacctaatagaattt 4642899  T
Q  107 taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc 206  Q
     ||| || ||  ||||    || || |||||||  |||||||| ||||  ||||  ||||| || || | ||| || |||||||| | |||||||||||     
T  4642900 caagcctctgcctccaaggtagtggctcgttattagaaccataaagatactcacaaagagtaccgtgctgcatgaactcataaaccaaaatcatctctgt 4642999  T
Q  207 atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaa 284  Q
     || || ||||||||||| | |||||| || |||||||| || |||||||| ||||||||||||||||||||||||||    
T  4643000 gtcatcgttgcaatatcccacgagggacaccaagtgaatgtggcgaagctgggagagcaactcgatttcattcatgaa 4643077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 4666208 - 4666308
Alignment:
Q  184 tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga 283  Q
    |||||||| |||||||||||||  || |||||||||||||| |  ||||| || |||||||| || ||||||||||||||||| |||||||| |||||||    
T  4666208 tcataaaccagaatcatctctgtgtcgtcattgcaatatcccacaagggataccaagtgaatgtggcgaagctgagagagcaattcgatttcgttcatga 4666307  T
Q  284 a 284  Q
    |    
T  4666308 a 4666308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 334
Target Start/End: Original strand, 4630182 - 4630332
Alignment:
Q  184 tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga 283  Q
    |||||||| |||||||||||||  |  |||||||||||||| |  ||||| || |||||||| || |||||||| ||||||||||||||||| |||||||    
T  4630182 tcataaaccagaatcatctctgtgttgtcattgcaatatcctacaagggacaccaagtgaatgtggcgaagctgggagagcaactcgatttcgttcatga 4630281  T
Q  284 attcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacag 334  Q
    | || ||   ||||||| |||| ||  ||||  | ||||||||||||||||    
T  4630282 actcgttggcaccttgttgagagcctgatttgaggcgttttatcgcaacag 4630332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 333
Target Start/End: Original strand, 4661077 - 4661226
Alignment:
Q  184 tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga 283  Q
    |||||||| |||||||||| ||  |  ||||| |||||||| |||||||| || || ||||| || |||||||| ||||||||||||||||| |||||||    
T  4661077 tcataaaccagaatcatctatgtgttgtcattacaatatcccatgagggacaccaaatgaatgtggcgaagctgggagagcaactcgatttcgttcatga 4661176  T
Q  284 attcatttagaccttgtcgagaacccaatttacgacgttttatcgcaaca 333  Q
    | || || | ||||||| |||| ||| ||||  | ||||| |||||||||    
T  4661177 actcgttgacaccttgttgagagcccgatttgaggcgtttaatcgcaaca 4661226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 334
Target Start/End: Original strand, 4652751 - 4652943
Alignment:
Q  142 gaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagt 241  Q
    |||||||| ||||  ||||  ||||| || |||| ||| || |||||||| | |||||| ||||  || |||||||||||||| | |||||| || ||||    
T  4652751 gaaccataaagatactcacacagagtaccgtgttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagt 4652850  T
Q  242 gaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacag 334  Q
    |||| || |||||||| ||||| |||||||| ||||||||||| || ||   ||||||| |||| ||  ||||  | ||||||||||||||||    
T  4652851 gaatgtggcgaagctgggagagtaactcgatctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacag 4652943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 4636130 - 4636251
Alignment:
Q  184 tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga 283  Q
    ||||| || |||||||||||||  |  || ||||||||||| |  ||||| || |||||||| || |||||||| |||||||||||||| || |||||||    
T  4636130 tcatagaccagaatcatctctgtcttgtcgttgcaatatcccacaagggataccaagtgaatgtggcgaagctgggagagcaactcgatctcgttcatga 4636229  T
Q  284 attcatttagaccttgtcgaga 305  Q
    | ||||||  ||||||| ||||    
T  4636230 actcatttgcaccttgttgaga 4636251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 4671945 - 4672013
Alignment:
Q  216 gcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaa 284  Q
    ||||||||||| |||||| || |||||||| || ||||| |||||||| ||||||||||| ||||||||    
T  4671945 gcaatatccaacgagggataccaagtgaatgtggcgaagttgagagagtaactcgatttcgttcatgaa 4672013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 332
Target Start/End: Complemental strand, 5479396 - 5479305
Alignment:
Q  241 tgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaacccaatttacgacgttttatcgcaac 332  Q
    ||||||||||||||||  |||||||  ||||||||||| ||||| ||||||  ||||||| | ||||||  |||| | |||||||| |||||    
T  5479396 tgaatatgacgaagcttcgagagcatgtcgatttcattgatgaactcattttcaccttgttgtgaacccggtttaagccgttttattgcaac 5479305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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