View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0929_low_2 (Length: 678)

Name: NF0929_low_2
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0929_low_2
NF0929_low_2
[»] chr6 (4 HSPs)
chr6 (32-558)||(8399735-8400264)
chr6 (448-674)||(8399658-8399884)
chr6 (225-289)||(8393824-8393888)
chr6 (225-289)||(8407729-8407793)
[»] scaffold0057 (1 HSPs)
scaffold0057 (35-115)||(64653-64735)
[»] chr4 (1 HSPs)
chr4 (39-88)||(35378580-35378629)
[»] chr2 (1 HSPs)
chr2 (35-96)||(21418873-21418934)
[»] chr3 (1 HSPs)
chr3 (48-87)||(41191259-41191298)
[»] chr5 (2 HSPs)
chr5 (49-79)||(38087476-38087506)
chr5 (126-159)||(18990007-18990040)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 32 - 558
Target Start/End: Complemental strand, 8400264 - 8399735
Alignment:
Q  32 ttcgatatttctaaccgaaattgtaatgaggaatcataaattggaattttagttaagaattaa--ttcttctataaattttagaaaagnnnnnnnnctct 129  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||          |||    
T  8400264 ttcgatgtttctaagcgaaattgtaatgaggaatcataaattggaattctagttaaggattaacattcttctataaattttagaaaaaat-------tct 8400172  T
Q  130 actttgtttttcgatggtaaagattttagt-----------gcaatgaagcctagaaagttaggtttttatttcaatgtatatcattagtgaccgtctgc 218  Q
    |||||||||||||||| |||||||||||||           |||||||||||||||||||||||| ||||||||| |||||||||||||| || ||||||    
T  8400171 actttgtttttcgatgttaaagattttagttaataattagtgcaatgaagcctagaaagttaggtgtttatttcattgtatatcattagtaactgtctgc 8400072  T
Q  219 atctgattgaacttctctattattgtagatgacttattcattttattattttcatttacctttgaacagtcgtaacactatagttgcacaaaaggatggg 318  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  8400071 atctgattgaacttgtctattattgtagataacttattcattttattattttcatttacctttgaacagtcttaacagtatagttgcacaaaaggatggg 8399972  T
Q  319 aagaaaagaaagaagaatgcagctgaagtaattacacctgtcgtaccacagtacatcaacaagctctacggtgtccccgcttttgtcccccctattaaca 418  Q
    ||||||| |   ||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8399971 aagaaaata---aagaatgaagctgaagtaattgcacctgtcgtaccacaatacatcaacaagctctacggtgtccccgcttttgtcccccctattaaca 8399875  T
Q  419 acaatgcgagcaagatcggaaataatgcacctattaacaacaatgtgagcaatattggaaataatgcaccggttaactccaatgtaagcaagattggaaa 518  Q
    |||||| |||||| || |||||||||||||| ||||||  |||||| ||||| |||||||||   |||||  |||||  |||||| ||||||||||||||    
T  8399874 acaatgtgagcaatattggaaataatgcaccgattaactccaatgtaagcaagattggaaatggcgcacctattaacaacaatgtgagcaagattggaaa 8399775  T
Q  519 tggcgcacctattaacaacaatgtgagcaatattggaaat 558  Q
    | | ||||||||||||||||||  |||||||| |||||||    
T  8399774 tagtgcacctattaacaacaattggagcaatactggaaat 8399735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 448 - 674
Target Start/End: Complemental strand, 8399884 - 8399658
Alignment:
Q  448 cctattaacaacaatgtgagcaatattggaaataatgcaccggttaactccaatgtaagcaagattggaaatggcgcacctattaacaacaatgtgagca 547  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8399884 cctattaacaacaatgtgagcaatattggaaataatgcaccgattaactccaatgtaagcaagattggaaatggcgcacctattaacaacaatgtgagca 8399785  T
Q  548 atattggaaatagtgcacctattaacaacaattggagcaatactggagattattcttcccaatttaccaacatatgggatagagctacaaataataaatg 647  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8399784 agattggaaatagtgcacctattaacaacaattggagcaatactggaaattattcttcccaatttaccaacatatgggatagagctacaaataataaatg 8399685  T
Q  648 gtgagttatgagatcttcatatcagtc 674  Q
    || ||||||||||||||||||||||||    
T  8399684 gtcagttatgagatcttcatatcagtc 8399658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 8393888 - 8393824
Alignment:
Q  225 ttgaacttctctattattgtagatgacttattcattttattattttcatttacctttgaacagtc 289  Q
    |||||||| |||||||||||| || || ||||| ||||||||||||  || ||||||||||||||    
T  8393888 ttgaacttgtctattattgtaaataacgtattcgttttattatttttgttcacctttgaacagtc 8393824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 8407729 - 8407793
Alignment:
Q  225 ttgaacttctctattattgtagatgacttattcattttattattttcatttacctttgaacagtc 289  Q
    |||||||| |||||||||||| |  || ||||| ||||||| |||||||| ||||||||||||||    
T  8407729 ttgaacttgtctattattgtaaacaacgtattcgttttattgttttcattcacctttgaacagtc 8407793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 64735 - 64653
Alignment:
Q  35 gatatttctaaccgaaattgtaatgaggaatcataaattggaattttagttaagaatta--attcttctataaattttagaaa 115  Q
    |||||| |||| |||||||| |||||||||||||||| || |||| || ||||| ||||  ||||||||||||||| ||||||    
T  64735 gatattcctaagcgaaattgcaatgaggaatcataaactgaaattctatttaaggattacgattcttctataaattgtagaaa 64653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 35378580 - 35378629
Alignment:
Q  39 tttctaaccgaaattgtaatgaggaatcataaattggaattttagttaag 88  Q
    |||||||||||||||| |||||||||||||| ||||| ||| ||||||||    
T  35378580 tttctaaccgaaattgcaatgaggaatcatatattgggattctagttaag 35378629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 21418934 - 21418873
Alignment:
Q  35 gatatttctaaccgaaattgtaatgaggaatcataaattggaattttagttaagaattaatt 96  Q
    |||||||| || | |||||| ||||| |||||||| |||||||||||||||||| |||||||    
T  21418934 gatatttcgaaacaaaattgcaatgaagaatcatatattggaattttagttaaggattaatt 21418873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 41191298 - 41191259
Alignment:
Q  48 gaaattgtaatgaggaatcataaattggaattttagttaa 87  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  41191298 gaaattgcaacgaggaatcataaattggaattttagttaa 41191259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 38087506 - 38087476
Alignment:
Q  49 aaattgtaatgaggaatcataaattggaatt 79  Q
    |||||||||||||||||||||||||||||||    
T  38087506 aaattgtaatgaggaatcataaattggaatt 38087476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 18990007 - 18990040
Alignment:
Q  126 ctctactttgtttttcgatggtaaagattttagt 159  Q
    |||||||||||||||||||| |||||||||||||    
T  18990007 ctctactttgtttttcgatgttaaagattttagt 18990040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 281 times since January 2019
Visitors: 6702