View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0929_low_25 (Length: 325)
Name: NF0929_low_25
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 32310660 - 32310394
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32310660 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
32310561 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattgttc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||| |
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| T |
32310560 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacgttcattggctttgaagctgtaaacgacgaaaacgtgccgttgctgctgaaattgttc |
32310461 |
T |
|
| Q |
230 |
ttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
32310460 |
ttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggtt |
32310394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 32813823 - 32814089
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32813823 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggtactgcagatgacaa |
32813922 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattgttc |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| |
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|
| T |
32813923 |
tgcttgcatgtatgacatccctttgtcattagagagttgaacattcattggctttgaagctgtaaacgtcgaaaacgtgccgttgctgctgaaattgttc |
32814022 |
T |
|
| Q |
230 |
ttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
32814023 |
ttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggtt |
32814089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 32786612 - 32786881
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32786612 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
32786711 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtc---attagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattg |
226 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| |
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|
| T |
32786712 |
tgcttgcatgtatgacatccctttgtcactactagagtgatgaacattcattttctttgaaattgtaaacgtcgaaaacgtgccgttgctgctgatatta |
32786811 |
T |
|
| Q |
227 |
ttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32786812 |
ttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggtt |
32786881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 32564160 - 32564426
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
32564160 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaaaatgctccagatggaactgcagatgacaa |
32564259 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattgttc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||| |
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|
| T |
32564260 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacgttcattggctttgaagctgtaaacgacgaaaacgtgccgttgctgctgaaattgttc |
32564359 |
T |
|
| Q |
230 |
ttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
32564360 |
ttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggtt |
32564426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 28222108 - 28221842
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
28222108 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaa |
28222009 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattgttc |
229 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| ||| ||| ||| |
|
|
| T |
28222008 |
tgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacattccgttgctgatgacattattc |
28221909 |
T |
|
| Q |
230 |
ttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
28221908 |
ttattgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatactcgggtctggtt |
28221842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 28214176 - 28214442
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28214176 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaatctctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaa |
28214275 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattgttc |
229 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| ||| ||| |
|
|
| T |
28214276 |
tgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacattccgttgctgctgacattattc |
28214375 |
T |
|
| Q |
230 |
ttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||| |||||||||| |
|
|
| T |
28214376 |
ttattgttgtcaggacagttttgcctcatctgactaaggaaatcgagaggtatactcgggtctggtt |
28214442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 32306530 - 32306261
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
32306530 |
ccatcagctgttgatcagaaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaatatgctccagatggcactgcagatgacaa |
32306431 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtc---attagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattg |
226 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| |||| | ||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
32306430 |
tgcttgcatgtatgacatccctttgtcactactagagtgatgagcatttactggctttgaaactgtaaacgtcgaaaacgtgccgttgctgttgatattg |
32306331 |
T |
|
| Q |
227 |
ttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||| |||||||||||||||||| |||||||||| |
|
|
| T |
32306330 |
ttcttactgtagtcaggacagtttagtctcatcagactgaaaaaatcgagaggtatactcgggtctggtt |
32306261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 89 - 281
Target Start/End: Complemental strand, 32317567 - 32317376
Alignment:
| Q |
89 |
tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcattagagtgatgaacattcattggctttgaaa |
188 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||||| |||||| |||||| |||||||| | |||||||||||| ||||| ||||||||||||| |
|
|
| T |
32317567 |
tgagtgtcaaaagatgtta-agatggcactgcatatgacaaagcttgcgcgtatgatatccctttattattagagtgatggacattaattggctttgaaa |
32317469 |
T |
|
| Q |
189 |
ctgtaaacgtcgaaaacgtgccattgctgctgatattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggta |
281 |
Q |
| |
|
|| ||| ||||||||| || | ||| |||||||||| |||| | ||||||||||||| ||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
32317468 |
ctataaccgtcgaaaatgtactgttgttgctgatattattctaattgttgtcaggacaattttgcctcatatgacttagaaaatcgagaggta |
32317376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 28174703 - 28174653
Alignment:
| Q |
234 |
tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatac |
284 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| |||| ||||| |
|
|
| T |
28174703 |
tgttgtctggacagtttagcctcatctgactaagaaaatcaagagctatac |
28174653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 28158788 - 28158724
Alignment:
| Q |
89 |
tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt |
153 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
28158788 |
tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttt |
28158724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 28169357 - 28169293
Alignment:
| Q |
89 |
tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt |
153 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
28169357 |
tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttt |
28169293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 28177478 - 28177383
Alignment:
| Q |
58 |
ccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt |
153 |
Q |
| |
|
|||||||||||| || |||||| |||| | ||||||||| |||||| ||||| ||||||||||||||| ||||||||| ||||||| |||| |
|
|
| T |
28177478 |
ccctcttcctcttaataaactcggatatcatcaagtgtcaaatgatgcttaagatgacactgcagatgacaacgcttgcatgcctgacatcacttt |
28177383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 28183206 - 28183155
Alignment:
| Q |
115 |
cactgcagatgacaatgcttgcatgtatgacatccctttgtcattagagtga |
166 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| | ||||||||| |
|
|
| T |
28183206 |
cactgcagatgacaacgcttccatgtatgacatcccttttttgttagagtga |
28183155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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