View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0929_low_26 (Length: 322)
Name: NF0929_low_26
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 18724598 - 18724679
Alignment:
| Q |
225 |
ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacacatat |
306 |
Q |
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| T |
18724598 |
ctttacttcgacactccttagaccagtgtctgacacctatatatcacttaaaagaggcgtgtcagacaactcagacaaatat |
18724679 |
T |
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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 17651560 - 17651479
Alignment:
| Q |
225 |
ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacacatat |
306 |
Q |
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| T |
17651560 |
ctttacttcgacactcctttgaccggtgtccgacacttatataacacttatatgaggcgtgtcggacaacttagacaaatat |
17651479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 41849306 - 41849235
Alignment:
| Q |
226 |
tttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactca |
297 |
Q |
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| T |
41849306 |
tttatttcgacactccttggactggtgtccgacacctatataacacttatatgaggcgtgtcggacaactca |
41849235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 12844213 - 12844132
Alignment:
| Q |
225 |
ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactcagacacatat |
306 |
Q |
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| T |
12844213 |
ctttacttcgacactcctaagatcgatgtctgacacttatataacactcatacgagctgtgtcagacaactcacacagatat |
12844132 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 11816795 - 11816867
Alignment:
| Q |
225 |
ctttacttcgacactccttagaccagtgtctgacacgtatatatcacttaaaagaggcgtgtcagacaactca |
297 |
Q |
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|
||||| |||||||||||| ||| | ||||||||||| ||||| |||||| | |||| ||||| ||||||||| |
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| T |
11816795 |
ctttatttcgacactcctaagatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaactca |
11816867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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