View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0929_low_27 (Length: 321)
Name: NF0929_low_27
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_low_27 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 166 - 321
Target Start/End: Complemental strand, 31252115 - 31251960
Alignment:
| Q |
166 |
gataattctcatcacaaattccttttgattatatgattaattaacatctaattgattcttatctcatttcattaccatgtataaaatcactccattagat |
265 |
Q |
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| T |
31252115 |
gataattctcatcacaaattccttttgattctatgatttattaacatctaattgattcttatctcatttcattaccatgtataaaatcactccattagat |
31252016 |
T |
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| Q |
266 |
gataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttgga |
321 |
Q |
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| T |
31252015 |
gataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttgga |
31251960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 167 - 321
Target Start/End: Original strand, 25815030 - 25815183
Alignment:
| Q |
167 |
ataattctcatcacaaattccttttgattatatgattaattaacatctaattgattcttatctcatttcattaccatgtataaaatcactccattagatg |
266 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
25815030 |
ataattctcatcacaaattccttttgattttatgattaattaacatcta-ttgattcttatctcatttcattaccatgtataaaatgaccccattagatg |
25815128 |
T |
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| Q |
267 |
ataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttgga |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25815129 |
ataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttgga |
25815183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 166 - 271
Target Start/End: Original strand, 23052807 - 23052912
Alignment:
| Q |
166 |
gataattctcatcacaaattccttttgattatatgattaattaacatctaattgattcttatctcatttcattaccatgtataaaatcactccattagat |
265 |
Q |
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||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| |||||||| |
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| T |
23052807 |
gataaatctcataacaaatttattttgattttatgattaattaacatctaattgattctcatctcattccatcaccatgtataaaatcacctcattagat |
23052906 |
T |
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| Q |
266 |
gataaa |
271 |
Q |
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|||||| |
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| T |
23052907 |
gataaa |
23052912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7471194 - 7471133
Alignment:
| Q |
1 |
atcctgaactatatatgggaatacaattggacaccgcaggcaattatcaggtaaagttacat |
62 |
Q |
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||||||||| | |||||||||| ||||| |||||||||| ||||||||||||||| |||||| |
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| T |
7471194 |
atcctgaaccaaatatgggaatccaatttgacaccgcagacaattatcaggtaaaattacat |
7471133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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