View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0929_low_32 (Length: 298)
Name: NF0929_low_32
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_low_32 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 29 - 298
Target Start/End: Original strand, 4712450 - 4712719
Alignment:
| Q |
29 |
atcgacgatcgaagtcgaagaaatcacccatagtcatgtttgctttggttggattatcatgtctcttgctagcatttataatgggagtaatagtttttct |
128 |
Q |
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| T |
4712450 |
atcgacgatcgaagtcgaagaaatcacccatagtcatgtttgctttggttggattatcatgtctcttgctagcatttataatgggagtaatagtttttct |
4712549 |
T |
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| Q |
129 |
tagaagaagaagatttgaatctcaatttgaaatgaaagaaagtcattggaagataaataatgaaggttcatcaattttaccatcccatttgtgtcgatgt |
228 |
Q |
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| T |
4712550 |
tagaagaagaagatttgaatctcaatttgaaatgaaagaaagtcattggaagataaataatgaaggttcatcaattttaccatcccatttgtgtcgatgt |
4712649 |
T |
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| Q |
229 |
tttactatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggttggaggat |
298 |
Q |
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| T |
4712650 |
tttactatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggttggaggat |
4712719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 133 - 296
Target Start/End: Original strand, 4697678 - 4697841
Alignment:
| Q |
133 |
agaagaagatttgaatctcaatttgaaatgaaagaaagtcattggaagataaataatgaaggttcatcaattttaccatcccatttgtgtcgatgtttta |
232 |
Q |
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| T |
4697678 |
agaagaagacttgaatctcatattgaaatggaagaaagttcatggaggacaagaaaagaaggttcgtcaactttaccatcccatttgtgccgctatttta |
4697777 |
T |
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| Q |
233 |
ctatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggttggagg |
296 |
Q |
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| T |
4697778 |
caatagcggagataagagccgctacaaacaacttcgaagatatttttatcattggagttggagg |
4697841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 156 - 296
Target Start/End: Original strand, 4784346 - 4784486
Alignment:
| Q |
156 |
tgaaatgaaagaaagtcattggaagataaataatgaaggttcatcaattttaccatcccatttgtgtcgatgttttactatagtggaaataagagccgct |
255 |
Q |
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| T |
4784346 |
tgaaatggaagaaagttcatggaagacaaagaaacaaggttcctcaagtttaccatcccatttgtgccgctattttacaatagcggaaataaaagcagct |
4784445 |
T |
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| Q |
256 |
acaaacaacttcgaagatatttttatcatcggggttggagg |
296 |
Q |
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| T |
4784446 |
acaaacaacttcgaagatatttttatcatcggggttggagg |
4784486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 191 - 296
Target Start/End: Original strand, 4816810 - 4816915
Alignment:
| Q |
191 |
aaggttcatcaattttaccatcccatttgtgtcgatgttttactatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggt |
290 |
Q |
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| T |
4816810 |
aaggttcctcaagtttaccatcccatttgtgccgctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggt |
4816909 |
T |
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| Q |
291 |
tggagg |
296 |
Q |
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|||||| |
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| T |
4816910 |
tggagg |
4816915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 130 - 284
Target Start/End: Original strand, 4846506 - 4846660
Alignment:
| Q |
130 |
agaagaagaagatttgaatctcaatttgaaatgaaagaaagtcattggaagataaataatgaaggttcatcaattttaccatcccatttgtgtcgatgtt |
229 |
Q |
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| T |
4846506 |
agaagaagaagatttgaatctaatcttcaaatggaagaaagttcatggaagacaaacaaagaaggttcctcaactttaccgtcccatttgtgccgctatt |
4846605 |
T |
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| Q |
230 |
ttactatagtggaaataagagccgctacaaacaacttcgaagatatttttatcat |
284 |
Q |
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| T |
4846606 |
ttacaatagcggagataagagaagctacaaacaacttcgaagatatttttatcat |
4846660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 296
Target Start/End: Complemental strand, 4863446 - 4863354
Alignment:
| Q |
204 |
tttaccatcccatttgtgtcgatgttttactatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggttggagg |
296 |
Q |
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| T |
4863446 |
tttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagg |
4863354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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