View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0929_low_33 (Length: 295)

Name: NF0929_low_33
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0929_low_33
NF0929_low_33
[»] chr7 (6 HSPs)
chr7 (38-230)||(19973552-19973744)
chr7 (38-266)||(47605285-47605512)
chr7 (47-263)||(19929318-19929534)
chr7 (38-264)||(19935594-19935820)
chr7 (38-264)||(19966733-19966959)
chr7 (161-227)||(17167287-17167353)
[»] chr5 (6 HSPs)
chr5 (38-223)||(4287873-4288060)
chr5 (9-41)||(37525935-37525967)
chr5 (9-41)||(37588096-37588128)
chr5 (9-41)||(37618670-37618702)
chr5 (9-41)||(37690372-37690404)
chr5 (9-41)||(37794438-37794470)
[»] chr3 (2 HSPs)
chr3 (9-41)||(14548458-14548490)
chr3 (184-220)||(7174856-7174892)
[»] chr6 (1 HSPs)
chr6 (191-223)||(3254907-3254939)


Alignment Details
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 38 - 230
Target Start/End: Original strand, 19973552 - 19973744
Alignment:
Q  38 aactattgcaactatgccctaattttcatcaatcaaataagacttcacatgttgttgaggcccttgctgacgaagctaatttcgatatcatttggtactt 137  Q
    ||||| |||| | ||||||||  | ||||||||||||||||| || ||||||||||||||||||||  || ||||| ||||| | | ||||||||| |||    
T  19973552 aactaatgcagcgatgccctagctgtcatcaatcaaataagagtttacatgttgttgaggcccttgtcgatgaagcaaattttgttttcatttggtgctt 19973651  T
Q  138 gacatttaaatctatgtgagagacactcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaacctcaca 230  Q
    |  ||||  |||||||| |||  ||||||||||||  |||||||||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  19973652 ggtatttgtatctatgtaagatgcactcttaattgtcatggtgttcaatactttcgcattctgcataatatagtatgcaaattgaacctcaca 19973744  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 266
Target Start/End: Original strand, 47605285 - 47605512
Alignment:
Q  38 aactattgcaactatgccctaattttcatcaatcaaataagacttcacatgttgttgaggcccttgctgacgaagctaatttcgatatcatttggtactt 137  Q
    |||||||||||||||||||||| ||||||| || |||| ||| || |||||||| |||||||||||   | || ||| |||||  |  || |||||||||    
T  47605285 aactattgcaactatgccctaactttcatccat-aaattagagtttacatgttgatgaggcccttgtccatgaggctgatttccttgacaattggtactt 47605383  T
Q  138 gacatttaaatctatgtgagagacactcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaacctcacactccgtg 237  Q
    |||||||| |||||    |||| || |||| ||||| |||||||||| |||||| | |||||||||||||||||| ||||||||||  ||||| ||||||    
T  47605384 gacatttatatctacagaagaggcaatcttgattgacatggtgttcaatacttttgaattctgcataatatatttggcaaattgaagttcacattccgtg 47605483  T
Q  238 cctgtatagcctttaagcaagcatgttct 266  Q
    | | || | ||||||||||||||||||||    
T  47605484 catttaaaacctttaagcaagcatgttct 47605512  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 263
Target Start/End: Complemental strand, 19929534 - 19929318
Alignment:
Q  47 aactatgccctaattttcatcaatcaaataagacttcacatgttgttgaggcccttgctgacgaagctaatttcgatatcatttggtacttgacatttaa 146  Q
    ||||||| | ||| ||||||||||||||||||| || |||||||| |||||||||||   ||||||||| ||||   |  ||||||| |||| |||||      
T  19929534 aactatgacataactttcatcaatcaaataagagtttacatgttgatgaggcccttgtgcacgaagctagtttcttcaaaatttggtgcttggcatttgt 19929435  T
Q  147 atctatgtgagagacactcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaacctcacactccgtgcctgtatag 246  Q
    ||||| |  ||||  |||||| ||||| ||||| |||| |||||| | ||||||||||||||||||||||||||||| |||||| || |||  | ||||     
T  19929434 atctacggaagaggtactcttgattgacatggtcttcaatacttttgaattctgcataatatattttgcaaattgaagctcacaatctgtgtatttataa 19929335  T
Q  247 cctttaagcaagcatgt 263  Q
    |||||||||||||||||    
T  19929334 cctttaagcaagcatgt 19929318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 264
Target Start/End: Complemental strand, 19935820 - 19935594
Alignment:
Q  38 aactattgcaactatgccctaattttcatcaatcaaataagacttcacatgttgttgaggcccttgctgacgaagctaatttcgatatcatttggtactt 137  Q
    |||||| ||||||||| ||||| |||||||||||||| |||| || |||||||| |||||||||||   ||||||| | ||||      ||||||| |||    
T  19935820 aactatagcaactatgacctaactttcatcaatcaaacaagagtttacatgttgatgaggcccttgtacacgaagcaagtttcatccaaatttggtgctt 19935721  T
Q  138 gacatttaaatctatgtgagagacactcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaacctcacactccgtg 237  Q
    |  ||||  |||||||  |||| | ||||| ||||| ||||| |||| |||||  | ||||||||||||||||||||||||||||| |||||  || |||    
T  19935720 ggtatttgtatctatggaagaggcgctcttgattgacatggtcttcaatacttctgaattctgcataatatattttgcaaattgaagctcacgatctgtg 19935621  T
Q  238 cctgtatagcctttaagcaagcatgtt 264  Q
    | |  ||||||||||||||||||||||    
T  19935620 cattcatagcctttaagcaagcatgtt 19935594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 264
Target Start/End: Complemental strand, 19966959 - 19966733
Alignment:
Q  38 aactattgcaactatgccctaattttcatcaatcaaataagacttcacatgttgttgaggcccttgctgacgaagctaatttcgatatcatttggtactt 137  Q
    |||||| ||||||||| ||||| |||||||||||||| |||| || |||||||| |||||||||||   ||||||| | ||||      ||||||| |||    
T  19966959 aactatagcaactatgacctaactttcatcaatcaaacaagagtttacatgttgatgaggcccttgtacacgaagcaagtttcatccaaatttggtgctt 19966860  T
Q  138 gacatttaaatctatgtgagagacactcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaacctcacactccgtg 237  Q
    |  ||||  |||||||  |||| | ||||| ||||| ||||| |||| |||||  | ||||||||||||||||||||||||||||| |||||  || |||    
T  19966859 ggtatttgtatctatggaagaggcgctcttgattgacatggtcttcaatacttctgaattctgcataatatattttgcaaattgaagctcacgatctgtg 19966760  T
Q  238 cctgtatagcctttaagcaagcatgtt 264  Q
    | |  ||||||||||||||||||||||    
T  19966759 cattcatagcctttaagcaagcatgtt 19966733  T

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Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 17167287 - 17167353
Alignment:
Q  161 cactcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaacctc 227  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  17167287 cactcttaattgaaatggtgtttagtactttcgcattctgcataatatattttacaaattgaacctc 17167353  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 4287873 - 4288060
Alignment:
Q  38 aactattgcaactat--gccctaattttcatcaatcaaataagacttcacatgttgttgaggcccttgctgacgaagctaatttcgatatcatttggtac 135  Q
    |||||||||||||||  ||||||||| || ||||||||| | || ||  |||||||||||||||||||   |||||||||| ||| ||| |||||| |||    
T  4287873 aactattgcaactatatgccctaattgtcgtcaatcaaacacgaatttgcatgttgttgaggcccttggcaacgaagctaacttcaataacatttgatac 4287972  T
Q  136 ttgacatttaaatctatgtgagagacactcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaa 223  Q
    ||  | |||  || | |   ||||  |||||||||||  ||||| ||||  ||||| | |||||||||||||||||||||||||||||    
T  4287973 tttgcttttctatttcttgaagaggtactcttaattgtcatggtattcaacacttttgaattctgcataatatattttgcaaattgaa 4288060  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 37525967 - 37525935
Alignment:
Q  9 attatactcccgaattgcatgccttatgtaact 41  Q
    |||||||||||||||||||||||||||||||||    
T  37525967 attatactcccgaattgcatgccttatgtaact 37525935  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 37588128 - 37588096
Alignment:
Q  9 attatactcccgaattgcatgccttatgtaact 41  Q
    |||||||||||||||||||||||||||||||||    
T  37588128 attatactcccgaattgcatgccttatgtaact 37588096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 37618702 - 37618670
Alignment:
Q  9 attatactcccgaattgcatgccttatgtaact 41  Q
    |||||||||||||||||||||||||||||||||    
T  37618702 attatactcccgaattgcatgccttatgtaact 37618670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 37690404 - 37690372
Alignment:
Q  9 attatactcccgaattgcatgccttatgtaact 41  Q
    |||||||||||||||||||||||||||||||||    
T  37690404 attatactcccgaattgcatgccttatgtaact 37690372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 37794470 - 37794438
Alignment:
Q  9 attatactcccgaattgcatgccttatgtaact 41  Q
    |||||||||||||||||||||||||||||||||    
T  37794470 attatactcccgaattgcatgccttatgtaact 37794438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 14548490 - 14548458
Alignment:
Q  9 attatactcccgaattgcatgccttatgtaact 41  Q
    |||||||||||||||||||||||||||||||||    
T  14548490 attatactcccgaattgcatgccttatgtaact 14548458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 7174856 - 7174892
Alignment:
Q  184 agtactttcgcattctgcataatatattttgcaaatt 220  Q
    ||||| || ||||||||||||||||||||||||||||    
T  7174856 agtacattagcattctgcataatatattttgcaaatt 7174892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 3254907 - 3254939
Alignment:
Q  191 tcgcattctgcataatatattttgcaaattgaa 223  Q
    |||||||||||| ||||||||||||||||||||    
T  3254907 tcgcattctgcaaaatatattttgcaaattgaa 3254939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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