View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0929_low_38 (Length: 278)

Name: NF0929_low_38
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0929_low_38
NF0929_low_38
[»] scaffold0029 (2 HSPs)
scaffold0029 (78-240)||(71726-71887)
scaffold0029 (78-208)||(70669-70800)
[»] chr7 (15 HSPs)
chr7 (80-240)||(45087067-45087227)
chr7 (78-208)||(45088180-45088310)
chr7 (78-196)||(45596869-45596988)
chr7 (78-135)||(21709158-21709215)
chr7 (79-135)||(26024888-26024944)
chr7 (78-135)||(21710602-21710659)
chr7 (150-206)||(30766614-30766670)
chr7 (78-137)||(23350915-23350974)
chr7 (78-137)||(36701358-36701417)
chr7 (78-137)||(39143146-39143205)
chr7 (78-135)||(10986695-10986752)
chr7 (78-119)||(26025883-26025924)
chr7 (78-131)||(29771575-29771628)
chr7 (78-131)||(39383805-39383858)
chr7 (78-131)||(40738193-40738246)
[»] chr1 (24 HSPs)
chr1 (81-240)||(33333308-33333467)
chr1 (78-239)||(46015754-46015915)
chr1 (78-208)||(33332177-33332307)
chr1 (93-208)||(2939718-2939833)
chr1 (78-208)||(46014701-46014831)
chr1 (78-135)||(51597961-51598018)
chr1 (78-135)||(16962010-16962067)
chr1 (78-135)||(51599434-51599491)
chr1 (79-135)||(50682588-50682644)
chr1 (78-129)||(39202965-39203016)
chr1 (151-206)||(47113044-47113099)
chr1 (78-208)||(2938567-2938692)
chr1 (78-135)||(16963427-16963484)
chr1 (150-206)||(35123127-35123183)
chr1 (150-206)||(36143065-36143121)
chr1 (78-137)||(7334927-7334986)
chr1 (78-137)||(7965509-7965568)
chr1 (78-137)||(11652876-11652935)
chr1 (78-137)||(46448740-46448799)
chr1 (80-137)||(7121819-7121876)
chr1 (78-131)||(20257968-20258021)
chr1 (78-131)||(39851546-39851599)
chr1 (81-137)||(34023573-34023629)
chr1 (78-130)||(48702214-48702266)
[»] chr8 (25 HSPs)
chr8 (78-240)||(9311021-9311183)
chr8 (78-240)||(14816570-14816731)
chr8 (78-240)||(14829009-14829170)
chr8 (81-208)||(9312104-9312231)
chr8 (78-135)||(39270795-39270852)
chr8 (78-135)||(39567063-39567120)
chr8 (79-135)||(45378549-45378605)
chr8 (80-135)||(39568509-39568564)
chr8 (80-135)||(44633775-44633830)
chr8 (81-132)||(44632709-44632760)
chr8 (78-111)||(14819395-14819428)
chr8 (150-206)||(13463078-13463134)
chr8 (78-137)||(4325973-4326032)
chr8 (78-137)||(5822024-5822083)
chr8 (78-137)||(5876835-5876894)
chr8 (78-137)||(9807279-9807338)
chr8 (78-137)||(11760914-11760973)
chr8 (78-137)||(21524656-21524715)
chr8 (78-137)||(29802160-29802219)
chr8 (78-137)||(45467437-45467496)
chr8 (91-137)||(162415-162461)
chr8 (78-131)||(12823266-12823319)
chr8 (78-131)||(29802576-29802629)
chr8 (78-137)||(41836493-41836553)
chr8 (78-130)||(45123621-45123673)
[»] chr6 (22 HSPs)
chr6 (78-192)||(29744781-29744895)
chr6 (78-192)||(29751084-29751198)
chr6 (78-186)||(14403688-14403796)
chr6 (78-135)||(21611915-21611972)
chr6 (78-135)||(5660192-5660249)
chr6 (78-135)||(21282817-21282874)
chr6 (84-135)||(21612882-21612933)
chr6 (80-135)||(5659106-5659162)
chr6 (150-206)||(20745657-20745713)
chr6 (150-206)||(27129809-27129865)
chr6 (78-137)||(3618781-3618840)
chr6 (78-137)||(8938886-8938945)
chr6 (78-137)||(18700401-18700460)
chr6 (78-137)||(26841605-26841664)
chr6 (78-137)||(30231476-30231535)
chr6 (79-137)||(13703382-13703440)
chr6 (78-131)||(5645546-5645599)
chr6 (147-208)||(14907091-14907152)
chr6 (78-131)||(31038321-31038374)
chr6 (150-206)||(12260518-12260574)
chr6 (81-137)||(18693635-18693691)
chr6 (78-110)||(29465755-29465787)
[»] chr3 (18 HSPs)
chr3 (78-192)||(27688486-27688600)
chr3 (78-192)||(27695519-27695633)
chr3 (78-192)||(20185757-20185871)
chr3 (78-168)||(20184448-20184538)
chr3 (78-240)||(39992390-39992552)
chr3 (80-208)||(39991507-39991634)
chr3 (79-135)||(21815909-21815965)
chr3 (79-135)||(21817401-21817457)
chr3 (150-206)||(32304304-32304360)
chr3 (81-137)||(49221510-49221566)
chr3 (78-137)||(12061624-12061683)
chr3 (78-137)||(18024916-18024975)
chr3 (78-137)||(38771617-38771676)
chr3 (78-137)||(40503731-40503790)
chr3 (78-137)||(45940679-45940738)
chr3 (151-196)||(5348837-5348881)
chr3 (81-137)||(31049077-31049133)
chr3 (81-137)||(51891299-51891355)
[»] chr4 (28 HSPs)
chr4 (78-240)||(11038577-11038739)
chr4 (78-196)||(51645912-51646029)
chr4 (78-137)||(36220599-36220658)
chr4 (79-190)||(36219408-36219518)
chr4 (78-135)||(702651-702708)
chr4 (78-135)||(756487-756544)
chr4 (78-135)||(770950-771007)
chr4 (78-135)||(35060454-35060511)
chr4 (80-135)||(16039679-16039734)
chr4 (78-208)||(11039660-11039788)
chr4 (78-135)||(701633-701690)
chr4 (78-135)||(769932-769989)
chr4 (78-135)||(16038275-16038332)
chr4 (78-135)||(35055333-35055390)
chr4 (78-135)||(757500-757557)
chr4 (78-137)||(34237946-34238005)
chr4 (78-137)||(36611042-36611101)
chr4 (82-164)||(50551386-50551468)
chr4 (150-206)||(9086365-9086421)
chr4 (78-137)||(19630763-19630822)
chr4 (78-137)||(25764362-25764421)
chr4 (78-137)||(31208493-31208552)
chr4 (78-137)||(41845501-41845560)
chr4 (91-137)||(52766286-52766332)
chr4 (78-131)||(5904505-5904558)
chr4 (147-196)||(51644805-51644854)
chr4 (78-137)||(11649504-11649564)
chr4 (150-206)||(40681431-40681487)
[»] scaffold0394 (1 HSPs)
scaffold0394 (78-192)||(14270-14385)
[»] chr2 (23 HSPs)
chr2 (78-240)||(13810476-13810636)
chr2 (78-185)||(7184881-7184989)
chr2 (78-135)||(36889748-36889805)
chr2 (78-137)||(36888338-36888397)
chr2 (79-208)||(13809426-13809554)
chr2 (150-206)||(20686603-20686659)
chr2 (150-206)||(28190415-28190471)
chr2 (78-134)||(35738363-35738419)
chr2 (78-137)||(7031805-7031864)
chr2 (78-206)||(19297527-19297655)
chr2 (78-137)||(26892464-26892523)
chr2 (78-137)||(26897903-26897962)
chr2 (78-137)||(27516159-27516218)
chr2 (78-137)||(31557091-31557150)
chr2 (78-137)||(34618521-34618580)
chr2 (79-137)||(10413995-10414053)
chr2 (91-137)||(30785836-30785882)
chr2 (91-137)||(31309646-31309692)
chr2 (78-131)||(38578187-38578240)
chr2 (78-130)||(15044739-15044791)
chr2 (81-137)||(28958114-28958170)
chr2 (78-137)||(38536263-38536323)
chr2 (150-206)||(40468118-40468174)
[»] chr5 (17 HSPs)
chr5 (78-202)||(19718824-19718948)
chr5 (78-137)||(11079629-11079688)
chr5 (78-137)||(1155964-1156023)
chr5 (78-137)||(4349495-4349554)
chr5 (78-137)||(4349874-4349933)
chr5 (78-137)||(4959561-4959620)
chr5 (78-137)||(6172340-6172399)
chr5 (78-137)||(9040743-9040802)
chr5 (78-137)||(9438237-9438296)
chr5 (78-137)||(22803589-22803648)
chr5 (78-137)||(30112709-30112768)
chr5 (78-137)||(31369926-31369985)
chr5 (78-137)||(37812231-37812290)
chr5 (78-137)||(42026663-42026722)
chr5 (78-131)||(8127472-8127525)
chr5 (80-137)||(37812550-37812607)
chr5 (78-130)||(25333194-25333246)
[»] scaffold0031 (3 HSPs)
scaffold0031 (78-135)||(123424-123481)
scaffold0031 (78-135)||(134300-134357)
scaffold0031 (78-135)||(129420-129477)
[»] scaffold0194 (2 HSPs)
scaffold0194 (78-137)||(19244-19303)
scaffold0194 (80-163)||(18070-18153)
[»] scaffold0295 (1 HSPs)
scaffold0295 (78-137)||(8215-8274)
[»] scaffold0006 (1 HSPs)
scaffold0006 (78-137)||(83385-83444)
[»] scaffold0017 (1 HSPs)
scaffold0017 (80-137)||(172910-172967)


Alignment Details
Target: scaffold0029 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 71887 - 71726
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||        ||||||| ||||||||||||||||||||||||    
T  71887 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccataactaaaaaaaggtccgttgtggtattttaacttttgctccgtt 71788  T
Q  178 acatgttttggtcccttccattaattttattnnnnnnnncgttagggtttattttcttcatct 240  Q
    |||||||||||||| |||| |||||||||||        ||||||||||||||||||||||||    
T  71787 acatgttttggtcctttccgttaattttatt-caaaaaacgttagggtttattttcttcatct 71726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 70669 - 70800
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact-nnnnnnntgtccgttttggtattttaacttttgctccgt 176  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||         |||| ||||||||||||||||||| ||||||    
T  70669 ggcttaattgctattttagtcccttaactaattttttggtatcggtttggtcccataactaaaaaaaaagtccattttggtattttaacttttactccgt 70768  T
Q  177 tacatgttttggtcccttccattaattttatt 208  Q
    ||||||||||||||| |||| |||||||||||    
T  70769 tacatgttttggtcctttccgttaattttatt 70800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 45087067 - 45087227
Alignment:
Q  80 cttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgttac 179  Q
    |||||||| ||||||||||| ||||||||||| ||||||||| |||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  45087067 cttaattgttattttagtcctttaactaattttttggtatcggtttggtcccataactaaaaaaaggtccgttttggtattttaacttttgctccgttac 45087166  T
Q  180 atgttttggtcccttccattaattttattnnnnnnnncgttagggtttattttcttcatct 240  Q
    |||||||||||  |||| |||||||||||        ||||||| ||||||||||||||||    
T  45087167 atgttttggtcttttccgttaattttattcaaaaaaacgttaggatttattttcttcatct 45087227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 45088310 - 45088180
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||||||||||||||  ||||||||  |||||||||||||||        |||||||||||||||||||||||||||| |||    
T  45088310 ggcttaattgctattttagtcccttaactaattgtttggtatcagtttggtcccataactaaaaaaaggtccgttttggtattttaacttttgctcagtt 45088211  T
Q  178 acatgttttggtcccttccattaattttatt 208  Q
    || ||||||||||| |||| |||||||||||    
T  45088210 acttgttttggtcctttccgttaattttatt 45088180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 196
Target Start/End: Original strand, 45596869 - 45596988
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgtt-ggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgt 176  Q
    |||||||||||||||||| ||||||||||||||| || ||||||| |||| |  |||||||        ||||||||||||||||||| |||  |||| |    
T  45596869 ggcttaattgctattttaatcccttaactaatttttttggtatcggtttgataacataactaaaaaaaagtccgttttggtattttaagtttatctccat 45596968  T
Q  177 tacatgttttggtcccttcc 196  Q
    ||||||||||||||| ||||    
T  45596969 tacatgttttggtcctttcc 45596988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 21709158 - 21709215
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| |||||||||||||||| || |||||| |||||||||||||    
T  21709158 ggcttaattgctattttcgtcccttaactaattttttagtatcgctttggtcccataa 21709215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 26024888 - 26024944
Alignment:
Q  79 gcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||| || ||||||||||| |||| ||||||||| |||||||||||||    
T  26024888 gcttaattgctatcttcgtcccttaacttattttttggtatcgctttggtcccataa 26024944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 21710659 - 21710602
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||| ||||| |||||| ||||||||||| |||| ||||||||| |||||||||||||    
T  21710659 ggctgaattgatatttttgtcccttaacttattttttggtatcgctttggtcccataa 21710602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 30766670 - 30766614
Alignment:
Q  150 gttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    ||||||||| |||| ||||  |||||||||||||||||||||||||| ||| |||||    
T  30766670 gttttggtactttatctttatctccgttacatgttttggtcccttccgttagtttta 30766614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 23350915 - 23350974
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| ||  ||||||||||||||| |||| ||||| ||||||||||||| |||||    
T  23350915 ggcttaattactcatttagtcccttaacttattttttggtttcgttttggtcccttaact 23350974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 36701358 - 36701417
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  36701358 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 36701417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 39143146 - 39143205
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| |||| |||| |||||||||||| ||  ||||||||||||||||||| |||||    
T  39143146 ggcttaaatgctcttttggtcccttaactatttaattggtatcgttttggtcccttaact 39143205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 10986695 - 10986752
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||| || |||| |||||||||||| ||| |||||||||||||| ||| ||||    
T  10986695 ggcttaatttctcttttcgtcccttaactatttttttggtatcgttttgctcctataa 10986752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 26025924 - 26025883
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtat 119  Q
    ||||||||||||||||| |||| ||||||||||| |||||||    
T  26025924 ggcttaattgctatttttgtcctttaactaatttcttggtat 26025883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 29771628 - 29771575
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtccc 131  Q
    ||||||| |||| |||| |||||||||||| ||  |||||||||||||||||||    
T  29771628 ggcttaaatgctttttttgtcccttaactatttaattggtatcgttttggtccc 29771575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 39383805 - 39383858
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtccc 131  Q
    ||||||||| || |||| ||||||||||| |||| ||||| |||||||||||||    
T  39383805 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtccc 39383858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 40738193 - 40738246
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtccc 131  Q
    ||||||||||||||||| |||||| ||||||||  || |||||| |||||||||    
T  40738193 ggcttaattgctattttcgtccctcaactaattaattagtatcgctttggtccc 40738246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 240
Target Start/End: Complemental strand, 33333467 - 33333308
Alignment:
Q  81 ttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgttaca 180  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||| |       |||||||||||||||||||| |||||||||||||||    
T  33333467 ttaattgctattttagtcccttaactaattttttggtatcagtttggtcccataattaaaaaaatgtccgttttggtattttaatttttgctccgttaca 33333368  T
Q  181 tgttttggtcccttccattaattttattnnnnnnnncgttagggtttattttcttcatct 240  Q
    | ||||||||  |||| |||||||||||        ||||| ||||||||||||||||||    
T  33333367 tcttttggtcatttccgttaattttattaaaaaaaacgttaaggtttattttcttcatct 33333308  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 239
Target Start/End: Complemental strand, 46015915 - 46015754
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||| |||||||||||||||| |||||| ||||||||| |||||||||||||||        ||||||||||||||||||||||||| ||||||    
T  46015915 ggcttaattgttattttagtcccttaagtaattttttggtatcgctttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccgtt 46015816  T
Q  178 acatgttttggtcccttccattaattttattnnnnnnnncgttagggtttattttcttcatc 239  Q
     | |||||| |||| |||| |||||||||||        |||||||||||||||||||||||    
T  46015815 tcttgttttagtcctttccgttaattttattcaaaaaaacgttagggtttattttcttcatc 46015754  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 33332177 - 33332307
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    ||||||||||||||||||||| |||||||| ||  ||||||||| |||||||||||||||       ||||||||||| |||||||||||||||||||||    
T  33332177 ggcttaattgctattttagtctcttaactagttgtttggtatcggtttggtcccataactaaaaaaatgtccgttttgatattttaacttttgctccgtt 33332276  T
Q  178 acatgttttggtcccttccattaattttatt 208  Q
    || ||||||||||  |||| |||||||||||    
T  33332277 acttgttttggtcatttccgttaattttatt 33332307  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 2939833 - 2939718
Alignment:
Q  93 ttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgttacatgttttggtccc 192  Q
    ||||||||||||||||| | ||||||||| |||||||| ||||||       |||| |||||||||||||||||||||||||||||| ||||||||||      
T  2939833 ttagtcccttaactaatattttggtatcggtttggtcctataactaaaaaaatgtctgttttggtattttaacttttgctccgttacttgttttggtcat 2939734  T
Q  193 ttccattaattttatt 208  Q
    |||| |||||||||||    
T  2939733 ttccgttaattttatt 2939718  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 46014701 - 46014831
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||  ||||||||||| ||||||||| || | ||||||||||        ||| |||||||||||||||||||||||| ||     
T  46014701 ggcttaattgctattttagtcatttaactaattttttggtatcgcttcgatcccataactaaaaaaaagtctgttttggtattttaacttttgctctgtc 46014800  T
Q  178 acatgttttggtcccttccattaattttatt 208  Q
    ||||||||| |||| |||| ||||| |||||    
T  46014801 acatgttttagtcctttccgttaatattatt 46014831  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 51597961 - 51598018
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||    
T  51597961 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccataa 51598018  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 16962010 - 16962067
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| |||||||||||||||| ||||||| | |||||||| ||||    
T  16962010 ggcttaattgctatttttgtcccttaactaattttttggtattgctttggtcctataa 16962067  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 51599491 - 51599434
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| |||| ||| ||||    
T  51599491 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttgatcctataa 51599434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 50682644 - 50682588
Alignment:
Q  79 gcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||||||||||||||| ||||||||| || ||| ||||||||| |||||||||||||    
T  50682644 gcttaattgctattttggtcccttaattatttttttggtatcgctttggtcccataa 50682588  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 39203016 - 39202965
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtc 129  Q
    |||||||||| ||||||||||| |||| |||||||||||||||| |||||||    
T  39203016 ggcttaattgttattttagtcctttaattaatttgttggtatcgatttggtc 39202965  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 47113099 - 47113044
Alignment:
Q  151 ttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    |||||||| |||| ||||  |||||||||||||||||||||||||| |||||||||    
T  47113099 ttttggtactttatctttatctccgttacatgttttggtcccttccgttaatttta 47113044  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 2938567 - 2938692
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||| ||||||||||||||||| ||||||||  |||||  ||||||||        ||||||||   |||||||| ||||||||||||    
T  2938567 ggcttaattgctattt-agtcccttaactaattt-ttggtatcagtttgg--ccataactaaaaaaaggtccgtttaa-tattttaatttttgctccgtt 2938661  T
Q  178 acatgttttggtcccttccattaattttatt 208  Q
    |||||||||| ||  |||| |||||||||||    
T  2938662 acatgttttgatcatttccgttaattttatt 2938692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 16963484 - 16963427
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||||||||| |||||| || ||||||||||||| ||||||||| ||||||| |||||    
T  16963484 ggcttaattgttattttcgttccttaactaattttttggtatcgatttggtctcataa 16963427  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 35123183 - 35123127
Alignment:
Q  150 gttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    |||||||||||||| ||||  || ||||||||||||||||||||||| ||| |||||    
T  35123183 gttttggtattttatctttatcttcgttacatgttttggtcccttccgttagtttta 35123127  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 36143121 - 36143065
Alignment:
Q  150 gttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    |||||||||||||| ||||  ||||||||||||||||||||| |||| ||| |||||    
T  36143121 gttttggtattttatctttatctccgttacatgttttggtccattccgttagtttta 36143065  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 7334986 - 7334927
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| |||| |||| |||||||||||| ||  ||||||||||||||||||| |||||    
T  7334986 ggcttaaatgctcttttggtcccttaactatttaattggtatcgttttggtcccttaact 7334927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 7965568 - 7965509
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| |||| |||| |||||||||||| ||  ||||||||||||||||||| |||||    
T  7965568 ggcttaaatgctcttttggtcccttaactatttatttggtatcgttttggtcccttaact 7965509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 11652876 - 11652935
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  11652876 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 11652935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 46448799 - 46448740
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| |||| ||||||||||||||||| ||  ||||||||| ||||||||| |||||    
T  46448799 ggcttaaatgctcttttagtcccttaactatttaattggtatcgctttggtcccttaact 46448740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 7121876 - 7121819
Alignment:
Q  80 cttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||| |||| |||| |||||||||||| ||  ||||||||||||||||||| |||||    
T  7121876 cttaaatgctcttttggtcccttaactatttaattggtatcgttttggtcccttaact 7121819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 20257968 - 20258021
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtccc 131  Q
    ||||||| |||| |||| |||||||||||| ||  |||||||||||||||||||    
T  20257968 ggcttaaatgctcttttggtcccttaactatttaattggtatcgttttggtccc 20258021  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 39851599 - 39851546
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtccc 131  Q
    ||||||| |||| |||| |||||||||||| ||  |||||||||||||||||||    
T  39851599 ggcttaaatgctcttttggtcccttaactatttaattggtatcgttttggtccc 39851546  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 34023629 - 34023573
Alignment:
Q  81 ttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||| |||| ||||||||||||||||| ||  ||||||||| ||||||||| |||||    
T  34023629 ttaaatgctcttttagtcccttaactatttaattggtatcgctttggtcccttaact 34023573  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 48702266 - 48702214
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcc 130  Q
    |||| ||||||  |||||||||||||| || |||||| |||||||||||||||    
T  48702266 ggctaaattgcatttttagtcccttaattattttgttagtatcgttttggtcc 48702214  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 240
Target Start/End: Original strand, 9311021 - 9311183
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||        ||| ||||||||||||||||||||| ||||||    
T  9311021 ggcttaattgctattttagtcccttatctaattttttggtatcgctttggtcccataactaaaaaaaagtctgttttggtattttaacttttgttccgtt 9311120  T
Q  178 acatgttttggtcccttccattaattttattnnnnnnnncgttagggtttattttcttcatct 240  Q
     | ||||||||||| |||| |||||||||||        ||||||||||||| ||||||||||    
T  9311121 tcttgttttggtcctttccgttaattttattcaaaaaaacgttagggtttatattcttcatct 9311183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 240
Target Start/End: Original strand, 14816570 - 14816731
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||        ||| ||||||||||||||||||||| ||||||    
T  14816570 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccattactaaaaaaa-gtctgttttggtattttaacttttgttccgtt 14816668  T
Q  178 acatgttttggtcccttccattaattttattnnnnnnnncgttagggtttattttcttcatct 240  Q
     | ||||||||| | |||| |||||||||||        ||||| ||||||||||||||||||    
T  14816669 tcttgttttggttctttccgttaattttattcaaaaaaacgttaaggtttattttcttcatct 14816731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 14829170 - 14829009
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||        ||| ||||||||||||||||||||| ||||||    
T  14829170 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccattactaaaaaaa-gtctgttttggtattttaacttttgttccgtt 14829072  T
Q  178 acatgttttggtcccttccattaattttattnnnnnnnncgttagggtttattttcttcatct 240  Q
     | ||||||||| | |||| |||||||||||        ||||| ||||||||||||||||||    
T  14829071 tcttgttttggttctttccgttaattttattcaaaaaaacgttaaggtttattttcttcatct 14829009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 208
Target Start/End: Complemental strand, 9312231 - 9312104
Alignment:
Q  81 ttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgttaca 180  Q
    ||||||||||||||||||| ||||||||||| ||||||||| |||| ||||||||||        ||||||||||||||||||| |||||||| || |||    
T  9312231 ttaattgctattttagtcctttaactaattttttggtatcgctttgatcccataactaaaaaaaagtccgttttggtattttaatttttgctctgtcaca 9312132  T
Q  181 tgttttggtcccttccattaattttatt 208  Q
    |||||| |||| |||  ||||| |||||    
T  9312131 tgttttagtcctttctgttaatattatt 9312104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 39270852 - 39270795
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  39270852 ggcttaattgctattttcgtcccttaacttattttttggtatcgttttggtcccataa 39270795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 39567063 - 39567120
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||    
T  39567063 ggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccataa 39567120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 45378605 - 45378549
Alignment:
Q  79 gcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||    
T  45378605 gcttaattgctattttcgtcccttaaataattttttggtatcgctttggtcccataa 45378549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 39568564 - 39568509
Alignment:
Q  80 cttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||    
T  39568564 cttaattgctatttttgtcccttaactaattttttagtatcgttttggttccataa 39568509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 44633830 - 44633775
Alignment:
Q  80 cttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||    
T  44633830 cttaattgctattttggttccttaactaattttttggtatcgctttggtcccataa 44633775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 44632709 - 44632760
Alignment:
Q  81 ttaattgctattttagtcccttaactaatttgttggtatcgttttggtccca 132  Q
    |||||||||||||| ||| ||||| |||||| ||||||||||||||||||||    
T  44632709 ttaattgctattttcgtctcttaattaattttttggtatcgttttggtccca 44632760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 14819428 - 14819395
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaattt 111  Q
    ||||||||||||||||||||||||||||||||||    
T  14819428 ggcttaattgctattttagtcccttaactaattt 14819395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 13463134 - 13463078
Alignment:
Q  150 gttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    ||||||||| |||| ||||  |||||||||||||||||||||||||| ||| |||||    
T  13463134 gttttggtactttatctttatctccgttacatgttttggtcccttccgttagtttta 13463078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 4326032 - 4325973
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  4326032 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 4325973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 5822083 - 5822024
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  5822083 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 5822024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 5876894 - 5876835
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  5876894 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 5876835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 9807338 - 9807279
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| |||| |||| |||||||||||| ||  ||||||||||||||||||| |||||    
T  9807338 ggcttaaatgctcttttggtcccttaactatttaattggtatcgttttggtcccttaact 9807279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 11760973 - 11760914
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| |||| |||| |||||||||||| ||  ||||||||||||||||||| |||||    
T  11760973 ggcttaaatgctcttttggtcccttaactatttaattggtatcgttttggtcccttaact 11760914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 21524715 - 21524656
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  21524715 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 21524656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 29802160 - 29802219
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  29802160 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 29802219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 45467437 - 45467496
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  45467437 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 45467496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 162415 - 162461
Alignment:
Q  91 ttttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||||||||||||| |||| ||||| ||||||||||||| |||||    
T  162415 ttttagtcccttaacttattttttggtttcgttttggtcccttaact 162461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 12823266 - 12823319
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtccc 131  Q
    ||||||||| || |||| ||||||||||| |||| ||||| |||||||||||||    
T  12823266 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtccc 12823319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 29802629 - 29802576
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtccc 131  Q
    ||||||||| || |||| ||||||||||| |||| ||||| |||||||||||||    
T  29802629 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtccc 29802576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 41836493 - 41836553
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaattt-gttggtatcgttttggtcccataact 137  Q
    ||||||| |||| |||||||||||||||||||||  ||||||||| ||||| ||| |||||    
T  41836493 ggcttaaatgctcttttagtcccttaactaatttaattggtatcgctttggacccttaact 41836553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 45123673 - 45123621
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcc 130  Q
    ||||||| |||| |||| |||||||||||| ||  ||||||||||||||||||    
T  45123673 ggcttaaatgctcttttggtcccttaactatttaattggtatcgttttggtcc 45123621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 29744781 - 29744895
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||        ||||||||||||||||||||||||| ||||||    
T  29744781 ggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccgtt 29744880  T
Q  178 acatgttttggtccc 192  Q
    |||||||||||||||    
T  29744881 acatgttttggtccc 29744895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 29751198 - 29751084
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||        ||||||||||||||||||||||||| ||||||    
T  29751198 ggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccgtt 29751099  T
Q  178 acatgttttggtccc 192  Q
    |||||||||||||||    
T  29751098 acatgttttggtccc 29751084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 14403688 - 14403796
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||        |||| ||||||||||||||||||||| |||||    
T  14403688 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgtt 14403787  T
Q  178 acatgtttt 186  Q
    |||||||||    
T  14403788 acatgtttt 14403796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 21611915 - 21611972
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  21611915 ggcttaattgctattttcgtcccttaactaattttttggtatcgatttggtcccataa 21611972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 5660249 - 5660192
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||||||||| |||||    
T  5660249 ggcttaattgctattttcgtccctaaactaattttttggtatcgttttggtctcataa 5660192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 21282817 - 21282874
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| ||||||||| |||||| || |||||| |||||||||||||    
T  21282817 ggcttaattgctattttcgtcccttaattaatttttttgtatcgctttggtcccataa 21282874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 21612933 - 21612882
Alignment:
Q  84 attgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||| |||||| ||||||||| |||||| |||||||||||||||||||||||    
T  21612933 attgttattttcgtcccttaattaattttttggtatcgttttggtcccataa 21612882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 5659106 - 5659162
Alignment:
Q  80 cttaattgctatttta-gtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||||||||||||||  |||||||||||||||| ||||||||  |||||||||||||    
T  5659106 cttaattgctatttttcgtcccttaactaattttttggtatcactttggtcccataa 5659162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 20745657 - 20745713
Alignment:
Q  150 gttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    ||||||||| |||| ||||  ||||||||||||| |||||||||||||||| |||||    
T  20745657 gttttggtactttatctttatctccgttacatgtgttggtcccttccattagtttta 20745713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 27129865 - 27129809
Alignment:
Q  150 gttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    |||||| || |||| ||||  |||||||||||||||||||||||||||||| |||||    
T  27129865 gttttgatactttatctttatctccgttacatgttttggtcccttccattagtttta 27129809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 3618781 - 3618840
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| |||| ||||||||||||||||| ||  ||||||||| ||||||||| |||||    
T  3618781 ggcttaaatgcttttttagtcccttaactatttaattggtatcgctttggtcccttaact 3618840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 8938886 - 8938945
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  8938886 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 8938945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 18700401 - 18700460
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  18700401 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 18700460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 26841664 - 26841605
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  26841664 ggcttaattactctttttgtcccttaacttattttttggtttcgttttggtcccttaact 26841605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 30231476 - 30231535
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||||   |||| |||||||||||||||||||| | || ||||||||||||||||    
T  30231476 ggcttaattggacttttggtcccttaactaatttgttgttttcattttggtcccataact 30231535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 13703382 - 13703440
Alignment:
Q  79 gcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||| |||| |||| |||||||||||| ||  ||||||||||||||||||| |||||    
T  13703382 gcttaaatgctcttttggtcccttaactatttaattggtatcgttttggtcccttaact 13703440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 5645546 - 5645599
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtccc 131  Q
    ||||||||| || |||| ||||||||||| |||| ||||| |||||||||||||    
T  5645546 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtccc 5645599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 14907091 - 14907152
Alignment:
Q  147 tccgttttggtattttaacttttgctccgttacatgttttggtcccttccattaattttatt 208  Q
    ||||||||||||||| ||||||  |||||||||| |||||| ||  |||| |||||||||||    
T  14907091 tccgttttggtatttaaactttatctccgttacacgttttgatcatttccgttaattttatt 14907152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 31038321 - 31038374
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtccc 131  Q
    ||||||||| || |||| ||||||||||| |||| ||||| |||||||||||||    
T  31038321 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtccc 31038374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 12260518 - 12260574
Alignment:
Q  150 gttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    ||||||||| |||| ||||  ||| |||||||||||||||||||||| ||| |||||    
T  12260518 gttttggtactttatctttatctctgttacatgttttggtcccttccgttagtttta 12260574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 18693691 - 18693635
Alignment:
Q  81 ttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  18693691 ttaattacttttttggtcccttaacttattttttggtttcgttttggtcccttaact 18693635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 29465755 - 29465787
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatt 110  Q
    ||||||||||||||||| |||||||||||||||    
T  29465755 ggcttaattgctattttcgtcccttaactaatt 29465787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 27688486 - 27688600
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||        ||||||||||||||||||||||||| ||||||    
T  27688486 ggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccgtt 27688585  T
Q  178 acatgttttggtccc 192  Q
    |||||||||||||||    
T  27688586 acatgttttggtccc 27688600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 27695633 - 27695519
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||        ||||||||||||||||||||||||| ||||||    
T  27695633 ggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactgaaaaaaagtccgttttggtattttaacttttgttccgtt 27695534  T
Q  178 acatgttttggtccc 192  Q
    |||||||||||||||    
T  27695533 acatgttttggtccc 27695519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 20185871 - 20185757
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||| ||| ||||||| || |||||| |||| ||||||||||        ||  ||||||||||||||||||||| ||||||    
T  20185871 ggcttaattgctattttagtccattacctaatttttttgtatcggtttgatcccataactaaaaaaaagtttgttttggtattttaacttttgttccgtt 20185772  T
Q  178 acatgttttggtccc 192  Q
    |||||||||||||||    
T  20185771 acatgttttggtccc 20185757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 20184448 - 20184538
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttt 168  Q
    |||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||         ||||||||||||||||||||||    
T  20184448 ggcttaattgttattttagtcccttaactaattttttggtatcggtttggtcccataactaaaaataaatccgttttggtattttaacttt 20184538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 39992552 - 39992390
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    ||||||||| |||||||||||||||||||||||| ||||||||  ||| ||||||||| |        | ||||||||||||||||| ||||  || |||    
T  39992552 ggcttaattactattttagtcccttaactaattttttggtatcacttttgtcccataattaaaaaaaagaccgttttggtattttaatttttattctgtt 39992453  T
Q  178 acatgttttggtcccttccattaattttattnnnnnnnncgttagggtttattttcttcatct 240  Q
     | ||||||||||  |||| |||||||||||        ||||||||||||||||||||||||    
T  39992452 tcttgttttggtcatttccgttaattttattaaaaaaaacgttagggtttattttcttcatct 39992390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 39991507 - 39991634
Alignment:
Q  80 cttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgttac 179  Q
    |||||||| ||||||||| ||||||||||||| ||| |||||||||| ||||||||||         |||||||||||||||||||||||||||| | ||    
T  39991507 cttaattgttattttagttccttaactaattttttgatatcgttttgatcccataactaaaaaaa-atccgttttggtattttaacttttgctccatcac 39991605  T
Q  180 atgttttggtcccttccattaattttatt 208  Q
    ||||||| |||| || | ||||| |||||    
T  39991606 atgttttagtccttttcgttaatattatt 39991634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 21815909 - 21815965
Alignment:
Q  79 gcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||||||||||||||| |||||||||||||||| || |||||| |||||| ||||||    
T  21815909 gcttaattgctattttcgtcccttaactaattttttagtatcgctttggttccataa 21815965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 21817457 - 21817401
Alignment:
Q  79 gcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||||||| |||||||  ||||||||||||||| ||||||||| |||||||||||||    
T  21817457 gcttaattactattttcatcccttaactaattttttggtatcgctttggtcccataa 21817401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 32304304 - 32304360
Alignment:
Q  150 gttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    ||||||||| |||| ||||  ||||||||||||||||||||| |||| |||||||||    
T  32304304 gttttggtactttatctttatctccgttacatgttttggtcctttccgttaatttta 32304360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 49221510 - 49221566
Alignment:
Q  81 ttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| |||||| |||||||||||||||| |||||||||  || |||||||||||    
T  49221510 ttaattgttatttttgtcccttaactaattttttggtatcgggttagtcccataact 49221566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 12061624 - 12061683
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  12061624 ggcttaattactcttttggtcccttaacttattttttggtgtcgttttggtcccttaact 12061683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 18024975 - 18024916
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| ||| ||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  18024975 ggcttaattactaatttggtcccttaacttattttttggtttcgttttggtcccttaact 18024916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 38771676 - 38771617
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  38771676 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 38771617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 40503790 - 40503731
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||||||||| |||| |||||||||||| ||  ||||||||| ||||||||| |||||    
T  40503790 ggcttaattgctcttttggtcccttaactatttaattggtatcgctttggtcccttaact 40503731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 45940738 - 45940679
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| ||||||||| |||||||||||| ||  ||||||||| ||||||||| |||||    
T  45940738 ggcttaaatgctattttggtcccttaactatttaattggtatcgctttggtcccttaact 45940679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 5348881 - 5348837
Alignment:
Q  151 ttttggtattttaacttttgctccgttacatgttttggtcccttcc 196  Q
    ||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  5348881 ttttggtattttaactttt-ctccgttacatattttggtcctttcc 5348837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 31049133 - 31049077
Alignment:
Q  81 ttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||| |||| ||||||||||||||||| ||  ||||||||| ||||||||| |||||    
T  31049133 ttaaatgcttttttagtcccttaactatttaattggtatcgctttggtcccttaact 31049077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 51891355 - 51891299
Alignment:
Q  81 ttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  51891355 ttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 51891299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 240
Target Start/End: Original strand, 11038577 - 11038739
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||||||| ||||||| ||||||| | |||||||||||||||        ||| ||||||||||||||||||||| || |||    
T  11038577 ggcttaattgctattttagtcccttagctaattttttggtattgctttggtcccataactaaaaaaaagtctgttttggtattttaacttttgttctgtt 11038676  T
Q  178 acatgttttggtcccttccattaattttattnnnnnnnncgttagggtttattttcttcatct 240  Q
     | ||||||||||| |||| |||||||||||        ||||||||||||||||||||||||    
T  11038677 tcttgttttggtcctttccgttaattttattcaaaaaaacgttagggtttattttcttcatct 11038739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 51646029 - 51645912
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||        ||||||||||||||||||| |||  |||||||    
T  51646029 ggcttaattgctattttagtcccttagctaattttttggtatcggtttggtcccataactaaaaaaa-gtccgttttggtattttaagtttatctccgtt 51645931  T
Q  178 acatgttttggtcccttcc 196  Q
    |||||||||||||| ||||    
T  51645930 acatgttttggtcctttcc 51645912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 36220658 - 36220599
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  36220658 ggcttaattgctattttagtaccttaactaattttttggtatcgttttggtcccataact 36220599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 36219408 - 36219518
Alignment:
Q  79 gcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtta 178  Q
    ||||||||||||||||||||||||||||||||| |  |||||| |||||||||||||||        ||||||||| ||||||||| |||  ||||||||    
T  36219408 gcttaattgctattttagtcccttaactaatttttgagtatcggtttggtcccataactaaaaaaa-gtccgttttagtattttaagtttatctccgtta 36219506  T
Q  179 catgttttggtc 190  Q
    ||| ||||||||    
T  36219507 catattttggtc 36219518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 702708 - 702651
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  702708 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataa 702651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 756487 - 756544
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  756487 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataa 756544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 771007 - 770950
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  771007 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataa 770950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 35060511 - 35060454
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  35060511 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataa 35060454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 16039734 - 16039679
Alignment:
Q  80 cttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||    
T  16039734 cttaattgctatttttgtcccttaactaattttttggtatcgtttcggtcccataa 16039679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 11039788 - 11039660
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||  ||||||||||| ||||||||  |||| ||  ||||||        |||| ||||||||||||||||||||||||||     
T  11039788 ggcttaattgctattttagtcatttaactaattttttggtatcactttgatc--ataactaaaaaaaagtccattttggtattttaacttttgctccgtc 11039691  T
Q  178 acatgttttggtcccttccattaattttatt 208  Q
    ||||||||| |||  |||| ||||| |||||    
T  11039690 acatgttttagtcatttccgttaatattatt 11039660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 701633 - 701690
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||    
T  701633 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccataa 701690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 769932 - 769989
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||    
T  769932 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccataa 769989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 16038275 - 16038332
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||    
T  16038275 ggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccataa 16038332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 35055333 - 35055390
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||    
T  35055333 ggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccataa 35055390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 757557 - 757500
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||||||||||||||||  |||||||||| |||| ||||||||| |||||||||||||    
T  757557 ggcttaattgctattttcatcccttaacttattttttggtatcgctttggtcccataa 757500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 34238005 - 34237946
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| ||||||||| |||||||||||| ||  ||||||||||||||||||| |||||    
T  34238005 ggcttaaatgctattttggtcccttaactatttaattggtatcgttttggtcccttaact 34237946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 36611042 - 36611101
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||||||||||||||| |||| ||||| ||||||||||||| |||||    
T  36611042 ggcttaattactcttttagtcccttaacttattttttggtttcgttttggtcccttaact 36611101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 50551468 - 50551386
Alignment:
Q  82 taattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaa 164  Q
    |||||| |||||||||||||||| |||||| ||||||||| ||| || ||||||||        |||||||||||||||||||    
T  50551468 taattgttattttagtcccttaattaattttttggtatcggtttagttccataactaaaaaaaagtccgttttggtattttaa 50551386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 9086365 - 9086421
Alignment:
Q  150 gttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    ||||||||| |||| ||||  |||||||||||||||||||||||||| ||| |||||    
T  9086365 gttttggtactttatctttatctccgttacatgttttggtcccttccgttagtttta 9086421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 19630763 - 19630822
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  19630763 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 19630822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 25764362 - 25764421
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  25764362 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 25764421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 31208552 - 31208493
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  31208552 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 31208493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 41845501 - 41845560
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| |||| |||| |||||||||||||||  ||||||||| ||||||||| |||||    
T  41845501 ggcttaaatgctcttttggtcccttaactaattaattggtatcgctttggtcccttaact 41845560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 52766286 - 52766332
Alignment:
Q  91 ttttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||||||||||||| |||| ||||| ||||||||||||| |||||    
T  52766286 ttttagtcccttaacttattttttggtttcgttttggtcccttaact 52766332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 5904505 - 5904558
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtccc 131  Q
    ||||||| |||| |||| |||||||||||| ||  |||||||||||||||||||    
T  5904505 ggcttaaatgcttttttggtcccttaactatttaattggtatcgttttggtccc 5904558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 51644805 - 51644854
Alignment:
Q  147 tccgttttggtattttaacttttgctccgttacatgttttggtcccttcc 196  Q
    |||||||||||||||||| |||  || |||||||||||||||||| ||||    
T  51644805 tccgttttggtattttaagtttatcttcgttacatgttttggtcctttcc 51644854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 11649504 - 11649564
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaattt-gttggtatcgttttggtcccataact 137  Q
    ||||||| |||| |||||||||||||||||||||  ||||||||| ||||| ||| |||||    
T  11649504 ggcttaaatgctcttttagtcccttaactaatttaattggtatcgctttggacccttaact 11649564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 40681487 - 40681431
Alignment:
Q  150 gttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    ||||||||| |||| ||||  ||| |||||||||||||||||||||| ||| |||||    
T  40681487 gttttggtactttatctttatctctgttacatgttttggtcccttccgttagtttta 40681431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 14270 - 14385
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaa-tttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgt 176  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||        ||||||||||||||||||||||||| |||||    
T  14270 ggcttaattgctattttagtcccttaactaatttttttggtatcggtttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccgt 14369  T
Q  177 tacatgttttggtccc 192  Q
    |||||||||| |||||    
T  14370 tacatgttttagtccc 14385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 13810636 - 13810476
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    ||||||||||| ||||||||| |||||||||||  ||||||||| |||||||||||||||        ||||| ||||||||||||||||||| || |||    
T  13810636 ggcttaattgcaattttagtctcttaactaatt--ttggtatcgctttggtcccataactaaaaaaaagtccgatttggtattttaacttttgttctgtt 13810539  T
Q  178 acatgttttggtcccttccattaattttattnnnnnnnncgttagggtttattttcttcatct 240  Q
     | ||||||||||  |||  |||||||||||        ||||||||||||||||||||||||    
T  13810538 tcttgttttggtcatttctgttaattttattcaaaaaaacgttagggtttattttcttcatct 13810476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 7184881 - 7184989
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact-nnnnnnntgtccgttttggtattttaacttttgctccgt 176  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||||||||         |||||||||||||||||||||||| ||||||    
T  7184881 ggcttaattgctattttagtctcttaactaattttttggtatcggtttgatcccataactaaaaaaaaggtccgttttggtattttaacttttactccgt 7184980  T
Q  177 tacatgttt 185  Q
    ||| |||||    
T  7184981 tacttgttt 7184989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 36889805 - 36889748
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  36889805 ggcttaattgctattttagtcccttaactaattttttggtatcggtttggtcccataa 36889748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 36888338 - 36888397
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||    
T  36888338 ggcttaattgctattttagtcccttagctaattttttggtatcggtttggtcccataact 36888397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 13809426 - 13809554
Alignment:
Q  79 gcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtta 178  Q
    |||||||| ||||||||| |||||||||||||| ||||||||| |||| ||| |||| |        ||||||||| ||||||||||||||| ||||| |    
T  13809426 gcttaatttctattttaggcccttaactaattttttggtatcgctttgatcctataattaaaaaaa-gtccgttttagtattttaacttttgttccgtca 13809524  T
Q  179 catgttttggtcccttccattaattttatt 208  Q
    |||||||| |||| |||| ||||| |||||    
T  13809525 catgttttagtcctttccgttaatattatt 13809554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 20686659 - 20686603
Alignment:
Q  150 gttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    ||||||||| |||| ||||  |||||||||||||||||||||||||| ||| |||||    
T  20686659 gttttggtactttatctttatctccgttacatgttttggtcccttccgttagtttta 20686603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 28190471 - 28190415
Alignment:
Q  150 gttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    ||||||||| |||| ||||  |||||||||||||||||||||||||| ||| |||||    
T  28190471 gttttggtactttatctttatctccgttacatgttttggtcccttccgttagtttta 28190415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 35738363 - 35738419
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccata 134  Q
    ||||||||| ||||||| || ||||||||||||| ||||||||| |||||| |||||    
T  35738363 ggcttaattactattttcgttccttaactaattttttggtatcgctttggttccata 35738419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 7031805 - 7031864
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  7031805 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 7031864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 19297527 - 19297655
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||| |||| ||||||||| | |||  ||||||||||||||||||| ||| |        |   ||||||||| ||||  |||  ||| |||    
T  19297527 ggcttaattgctcttttcgtcccttaagttattatttggtatcgttttggtcccttaagtaaaaaaaagattgttttggtactttatttttatctctgtt 19297626  T
Q  178 acatgttttggtcccttccattaatttta 206  Q
    ||||||||||||||||||| |||||||||    
T  19297627 acatgttttggtcccttcctttaatttta 19297655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 26892464 - 26892523
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||||||||| |||| ||||||||||| |||| ||||| |||||||| |||| |||||    
T  26892464 ggcttaattgctcttttggtcccttaacttattttttggtttcgttttgatcccttaact 26892523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 26897903 - 26897962
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||||||||| |||| ||||||||||| |||| ||||| |||||||| |||| |||||    
T  26897903 ggcttaattgctcttttggtcccttaacttattttttggtttcgttttgatcccttaact 26897962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 27516159 - 27516218
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  27516159 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 27516218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 31557091 - 31557150
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| |||| ||||||||||||||||| ||  ||||||||| ||||||||| |||||    
T  31557091 ggcttaaatgctcttttagtcccttaactatttaattggtatcgctttggtcccttaact 31557150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 34618580 - 34618521
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| |||| ||||||||||||||||| ||  ||||||||| ||||||||| |||||    
T  34618580 ggcttaaatgctcttttagtcccttaactatttaattggtatcgctttggtcccttaact 34618521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 10413995 - 10414053
Alignment:
Q  79 gcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||||| ||||||| ||||||||| | |||| ||||| ||||||||||||| |||||    
T  10413995 gcttaattactattttggtcccttaatttattttttggtttcgttttggtcccttaact 10414053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 30785836 - 30785882
Alignment:
Q  91 ttttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||||||||||||| |||| ||||| ||||||||||||| |||||    
T  30785836 ttttagtcccttaacttattttttggtttcgttttggtcccttaact 30785882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 31309692 - 31309646
Alignment:
Q  91 ttttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||||||||||||| |||| ||||| ||||||||||||| |||||    
T  31309692 ttttagtcccttaacttattttttggtttcgttttggtcccttaact 31309646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 38578240 - 38578187
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtccc 131  Q
    ||||||||| || |||| ||||||||||| |||| ||||| |||||||||||||    
T  38578240 ggcttaattactcttttggtcccttaacttattttttggtgtcgttttggtccc 38578187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 15044739 - 15044791
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcc 130  Q
    ||||||| ||||||||| |||||||||||| ||  ||||||||| ||||||||    
T  15044739 ggcttaagtgctattttggtcccttaactatttaattggtatcgctttggtcc 15044791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 28958170 - 28958114
Alignment:
Q  81 ttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  28958170 ttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 28958114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 38536263 - 38536323
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttg-ttggtatcgttttggtcccataact 137  Q
    ||||||| |||| |||| |||||||||||| |||  ||||||||||||||||||| |||||    
T  38536263 ggcttaaatgctcttttggtcccttaactattttacttggtatcgttttggtcccttaact 38536323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 40468118 - 40468174
Alignment:
Q  150 gttttggtattttaacttttgctccgttacatgttttggtcccttccattaatttta 206  Q
    ||||||||| |||| ||||  ||||| |||||||||||||||||||| ||| |||||    
T  40468118 gttttggtactttatctttatctccgatacatgttttggtcccttccgttagtttta 40468174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 19718948 - 19718824
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtattttaacttttgctccgtt 177  Q
    |||||||||||||||||||||| ||||||||||| ||||||||| |||| ||| ||||||         |||||||||||||||||||||||  |||||     
T  19718948 ggcttaattgctattttagtcctttaactaattttttggtatcgctttgatcctataactaaaaaaaaatccgttttggtattttaacttttattccgtc 19718849  T
Q  178 acatgttttggtcccttccattaat 202  Q
    ||||||||| |||| |||| |||||    
T  19718848 acatgttttagtcctttccgttaat 19718824  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 11079688 - 11079629
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| ||||||||| |||||||||||| ||  ||||||||||||||||||| |||||    
T  11079688 ggcttaaatgctattttggtcccttaactatttaattggtatcgttttggtcccttaact 11079629  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 1155964 - 1156023
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  1155964 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 1156023  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 4349495 - 4349554
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| |||||||| ||||||||||    
T  4349495 ggcttaattactcttttggtcccttaacttattttttggtttcgttttgatcccataact 4349554  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 4349933 - 4349874
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  4349933 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 4349874  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 4959561 - 4959620
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| ||||||||| |||||||||||| ||  ||||||||| ||||||||| |||||    
T  4959561 ggcttaaatgctattttggtcccttaactatttaattggtatcgctttggtcccttaact 4959620  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 6172399 - 6172340
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  6172399 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 6172340  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 9040743 - 9040802
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  9040743 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 9040802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 9438237 - 9438296
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  9438237 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 9438296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 22803648 - 22803589
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  22803648 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 22803589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 30112768 - 30112709
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||||||||| |||||||||||||| || ||  ||||||||| ||||||||| |||||    
T  30112768 ggcttaattgctcttttagtcccttaagtatttaattggtatcgctttggtcccttaact 30112709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 31369985 - 31369926
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  31369985 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 31369926  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 37812231 - 37812290
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  37812231 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 37812290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 42026722 - 42026663
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  42026722 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 42026663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 8127472 - 8127525
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtccc 131  Q
    ||||||||| || |||| ||||||||||| |||| ||||| |||||||||||||    
T  8127472 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtccc 8127525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 37812607 - 37812550
Alignment:
Q  80 cttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  37812607 cttaattacttttttggtcccttaacttattttttggtttcgttttggtcccttaact 37812550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 25333246 - 25333194
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcc 130  Q
    ||||||| ||||||||| |||||||||||| ||  ||||||||| ||||||||    
T  25333246 ggcttaaatgctattttggtcccttaactatttaattggtatcgctttggtcc 25333194  T

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Target: scaffold0031 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 123424 - 123481
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||    
T  123424 ggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccataa 123481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 134300 - 134357
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    ||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||    
T  134300 ggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccataa 134357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 129477 - 129420
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataa 135  Q
    |||||||||| |||||| ||||||||||| |||| ||||||||  |||||||||||||    
T  129477 ggcttaattgttattttcgtcccttaacttattttttggtatcactttggtcccataa 129420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 19303 - 19244
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    |||||||||| || |||||| ||||||||||||| ||| ||||| |||||||||||||||    
T  19303 ggcttaattgttactttagttccttaactaattttttgatatcggtttggtcccataact 19244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 18070 - 18153
Alignment:
Q  80 cttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataactnnnnnnntgtccgttttggtatttta 163  Q
    ||||||| |||||||||||||||||||||||| |  |||||| ||||||| |||||||       |||||||||||||| ||||    
T  18070 cttaattactattttagtcccttaactaatttttgagtatcggtttggtctcataactaaaaaaatgtccgttttggtagttta 18153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 8274 - 8215
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  8274 ggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 8215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 83444 - 83385
Alignment:
Q  78 ggcttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| ||||||||| |||||||||||| ||  ||||||||| ||||||||| |||||    
T  83444 ggcttaaatgctattttggtcccttaactatttaattggtatcgctttggtcccttaact 83385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 172967 - 172910
Alignment:
Q  80 cttaattgctattttagtcccttaactaatttgttggtatcgttttggtcccataact 137  Q
    ||||||| || |||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  172967 cttaattactcttttggtcccttaacttattttttggtttcgttttggtcccttaact 172910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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