View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0929_low_39 (Length: 277)

Name: NF0929_low_39
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0929_low_39
NF0929_low_39
[»] chr8 (4 HSPs)
chr8 (211-277)||(3056733-3056799)
chr8 (214-277)||(3070113-3070176)
chr8 (211-277)||(3035865-3035931)
chr8 (33-70)||(44680335-44680372)


Alignment Details
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 3056733 - 3056799
Alignment:
Q  211 agttgttgaacatgaatcaaagcaaaaccaacactggaataagaggaacaacagggaatgttgcact 277  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||    
T  3056733 agttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcact 3056799  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 3070176 - 3070113
Alignment:
Q  214 tgttgaacatgaatcaaagcaaaaccaacactggaataagaggaacaacagggaatgttgcact 277  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||    
T  3070176 tgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcact 3070113  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 3035865 - 3035931
Alignment:
Q  211 agttgttgaacatgaatcaaagcaaaaccaacactggaataagaggaacaacagggaatgttgcact 277  Q
    |||||||||||||||||||||||||||||||||| || |||||||||| || |||| ||||||||||    
T  3035865 agttgttgaacatgaatcaaagcaaaaccaacaccggcataagaggaataaaagggtatgttgcact 3035931  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 44680372 - 44680335
Alignment:
Q  33 atgcttggaacatttctgctaaggtatctagagatgga 70  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44680372 atgcttggaacatttctgctaaggtatctagagatgga 44680335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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