View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0929_low_42 (Length: 266)
Name: NF0929_low_42
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 6317820 - 6317568
Alignment:
| Q |
1 |
aagtttcctccaagaattatttattaaagtttgttttttaggagatgttttcataagttctcctagagagtctcacaaaacaaggccaagagttgaaagg |
100 |
Q |
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| T |
6317820 |
aagtttcctcgaagaattatttattaaagtttgttttttaggagatgttttcataagttctcctagagagtctcacaaaacaaggccaagagttgaaagg |
6317721 |
T |
|
| Q |
101 |
gtttggtttgagataaaggctagagttgaagaaaacaggctcaagcctcttttgatcaagaaagttaaaccttttattgaatctgatttagtttcctggg |
200 |
Q |
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| T |
6317720 |
gtttggtttgagataaaggctagaattgaagaaaacaggctcaagcctcttttgatcaagaaagttaaaccttttattgaatctgatttagtttcctggg |
6317621 |
T |
|
| Q |
201 |
ctaatttgatgtctaatatgtcatatacaaagtttcgaccaattcttcctcca |
253 |
Q |
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| T |
6317620 |
ctaatttgatgtctaatatgtcatatacaaagtttcgaccaattcttcctcca |
6317568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 79 - 248
Target Start/End: Complemental strand, 6297997 - 6297828
Alignment:
| Q |
79 |
aacaaggccaagagttgaaagggtttggtttgagataaaggctagagttgaagaaaacaggctcaagcctcttttgatcaagaaagttaaaccttttatt |
178 |
Q |
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|||||||||||| ||||||||||| ||||||||| ||| ||| ||||||| || | ||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
6297997 |
aacaaggccaagtgttgaaagggtctggtttgaggtaatggcccgagttgaggacagcagactcaagcctctttcgatcaagaaagttaaaccttttatt |
6297898 |
T |
|
| Q |
179 |
gaatctgatttagtttcctgggctaatttgatgtctaatatgtcatatacaaagtttcgaccaattcttc |
248 |
Q |
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| T |
6297897 |
gaatctgattcagtttcctgggctaatttgatgtctaatttgtcgtataccaagttgcgaccagttcttc |
6297828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 33186384 - 33186418
Alignment:
| Q |
47 |
gttttcataagttctcctagagagtctcacaaaac |
81 |
Q |
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| T |
33186384 |
gttttcataagttctcctagacagtctcacaaaac |
33186418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 34034175 - 34034210
Alignment:
| Q |
46 |
tgttttcataagttctcctagagagtctcacaaaac |
81 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
34034175 |
tgttttcataagttctcctaaagagtctcacaaaac |
34034210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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