View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0929_low_45 (Length: 254)
Name: NF0929_low_45
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 39934123 - 39934332
Alignment:
| Q |
30 |
gaacgacgggagaagatcatcttcagtgacatgagagtgcaatggaataacaaccccatannnnnnnacaattgacttagtcaaaattattaaaaaacca |
129 |
Q |
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| T |
39934123 |
gaacgacgggagaaaatcatcttcagtgacaggagagtgcagtggaataataaccccatatttttctacaattgacttagtcaaaattattgaaaaacca |
39934222 |
T |
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| Q |
130 |
ttaaacggtggagattgacactggattgtatccagtgaaaaattcattggagagaatccccatccttgagcgacaccctaaaatcttgttgacacttaga |
229 |
Q |
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| T |
39934223 |
ttaaatggtggagattgacactggactgtatccaatgaaaaattcattggagagaatccccatccttgaacgacacactaaaattttgttgacacttaga |
39934322 |
T |
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| Q |
230 |
tgctaatgat |
239 |
Q |
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|||||||||| |
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| T |
39934323 |
tgctaatgat |
39934332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 4473470 - 4473574
Alignment:
| Q |
57 |
gacatgagagtgcaatggaataacaaccccatannnnnnnacaattgacttagtcaaaattattaaaaaaccattaaacggtggagattgacactggatt |
156 |
Q |
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| T |
4473470 |
gacatgagagtgtagtggattaacaaccccacatttttctacaattgacttagtcaaaattattaaataaccgttcaatggtgtagattggcactggact |
4473569 |
T |
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| Q |
157 |
gtatc |
161 |
Q |
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||||| |
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| T |
4473570 |
gtatc |
4473574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 23322492 - 23322582
Alignment:
| Q |
101 |
ttgacttagtcaaaattattaaaaaaccattaaacggtggagattgacactggattgtatccagtgaaaaattcattggagagaatcccca |
191 |
Q |
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| T |
23322492 |
ttgacttggtcaaaataattaaagagccattggatggtgaagatttacactagactgcatccagtgaaaagttcactggagagaatcccca |
23322582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 7187160 - 7187070
Alignment:
| Q |
104 |
acttagtcaaaattattaaaaaaccattaaacggtggagattgacactggattgtatccagtgaaaaa-ttcattggagagaatccccatcc |
194 |
Q |
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| T |
7187160 |
acttggtcaaaattattaaataaccattaaatggtggatatttacacgggactatatccgataaaaaagttcattgga-agaatccccatcc |
7187070 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 2225231 - 2225316
Alignment:
| Q |
109 |
gtcaaaattattaaaaaaccattaaacggtggagattgacactggattgtatccagtgaaaaattcattggagagaatccccatcc |
194 |
Q |
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||||||||||||||| |||||||||| |||| |||||| |||| | | |||||| ||||| |||| | ||||||||||||||| |
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| T |
2225231 |
gtcaaaattattaaataaccattaaatggtgaagattggcactcaactatatccaatgaaattttcactacagagaatccccatcc |
2225316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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