View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0929_low_49 (Length: 251)

Name: NF0929_low_49
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0929_low_49
NF0929_low_49
[»] chr2 (12 HSPs)
chr2 (10-251)||(11110016-11110259)
chr2 (11-188)||(11118085-11118262)
chr2 (10-176)||(11145244-11145410)
chr2 (10-185)||(11136936-11137111)
chr2 (10-191)||(10794028-10794209)
chr2 (10-176)||(11149178-11149344)
chr2 (10-175)||(11104099-11104264)
chr2 (10-175)||(11155562-11155727)
chr2 (76-168)||(11200121-11200213)
chr2 (59-175)||(11095640-11095756)
chr2 (10-106)||(11171239-11171335)
chr2 (62-173)||(11191956-11192067)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 11110259 - 11110016
Alignment:
Q  10 aagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatatttgga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11110259 aagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatatttgga 11110160  T
Q  110 aaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgtttgaatcataaataatatcaagttatttagtgct 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11110159 aaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgtttcaatcataaataatatcaagttatttagtgct 11110060  T
Q  210 ctatctcaaaaactacatatatac--atatgatcataaaaaatt 251  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||    
T  11110059 ctatctcaaaaactacatatatacatatatgataataaaaaatt 11110016  T

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Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 11118262 - 11118085
Alignment:
Q  11 agaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatatttggaa 110  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||| | ||| || || ||||||||||||||||||| |||||||||||| |||||||||     
T  11118262 agaatatcagcacaagaaactttattaggacaaactttttccacctcagttttaatctgattgataacatccaatcttcttaaggagtttatatttggac 11118163  T
Q  111 aagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgtttgaatcataaat 188  Q
     |||||||||||||||| ||||||| |  || |||||||||||||||||||||||||||||||| || ||||||||||    
T  11118162 cagcatcttgttcactcgcaatagtagaagttttattcaacaaaactgatgcatcacaaccctgattcaatcataaat 11118085  T

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Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 11145410 - 11145244
Alignment:
Q  10 aagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatatttgga 109  Q
    |||||||||||||||||||||| | ||||||||||| ||||| |||   || ||||||||||| | ||||||||| ||||| || |||||  | ||||||    
T  11145410 aagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcacaacatccaaacctctcaatgagtttctgtttgga 11145311  T
Q  110 aaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgtt 176  Q
    ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||    
T  11145310 aaagcatcttgttcactgacaatagtagcagtgttattcaacaaaactgatgcatcacaaccctgtt 11145244  T

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Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 11137111 - 11136936
Alignment:
Q  10 aagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatatttgga 109  Q
    |||||||||||||||||||||| | ||||| ||||| |||||||||   || ||||||||||| | ||||||||| |||| ||  ||||||||||||||     
T  11137111 aagaatatcagcacaagaaactgtgttaggacaagccttttccactgctgttttgatttgattcacaacatccaaacctcgtagagagttgatatttggg 11137012  T
Q  110 aaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgtttgaatcata 185  Q
    ||||| ||||||||||||||||| ||  | || || ||||| |||||||||||||||||||||||||  |||||||    
T  11137011 aaagcttcttgttcactcacaatggtatcagttttgttcaataaaactgatgcatcacaaccctgttacaatcata 11136936  T

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Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 10794028 - 10794209
Alignment:
Q  10 aagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatatttgga 109  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||  |||| | ||| | ||| ||||||| |||||||||||||||     
T  10794028 aagaatatcagcacaagaaactgtattagggcaagctttttccacgtctgtcttgatacgattcacaacttgcaaacctcttatggagttgatatttggg 10794127  T
Q  110 aaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgtttgaatcataaataat 191  Q
    | ||| | | |||| ||||| ||||| || ||||| |||| |||||  |||||||| ||||||||||| ||| || ||||||    
T  10794128 agagcttgtagttcgctcacgatagtagcagtgttgttcagcaaaatggatgcatcgcaaccctgtttcaataattaataat 10794209  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 11149344 - 11149178
Alignment:
Q  10 aagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatatttgga 109  Q
    |||||||||||| ||||||||| | ||||| ||||| ||||||||    || ||||||||||| | |||||| || |||||||| |||||  | ||||||    
T  11149344 aagaatatcagcgcaagaaactgtgttaggacaagccttttccacagctgttttgatttgattcacaacatctaaacctcttaatgagtttctgtttgga 11149245  T
Q  110 aaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgtt 176  Q
    ||||||||||||||||||||||  ||  | || || ||||  |||||||||||||||||||||||||    
T  11149244 aaagcatcttgttcactcacaacggtatcagttttgttcagtaaaactgatgcatcacaaccctgtt 11149178  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 11104264 - 11104099
Alignment:
Q  10 aagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatatttgga 109  Q
    |||||||||||||||||||||  | ||||| ||  ||| ||| |||   |||||||||| ||| | ||||||||| |   |||| |||||  | ||||||    
T  11104264 aagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgattttattcacaacatccaaacgctttaatgagtttctgtttgga 11104165  T
Q  110 aaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgt 175  Q
    || |||||||||||||||||||| ||  | ||||| ||||||||||||||| ||||||| ||||||    
T  11104164 aatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgt 11104099  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 11155727 - 11155562
Alignment:
Q  10 aagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatatttgga 109  Q
    |||||||||||||||||||||| | ||||| |||||  |||| |    ||| ||||| ||||| | ||||||||| |||||||| |||||| ||||||||    
T  11155727 aagaatatcagcacaagaaactgtgttaggacaagcactttctatagcagttttgatctgatttacaacatccaaacctcttaaagagttgttatttgga 11155628  T
Q  110 aaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgt 175  Q
    ||||| | |||||| || || || || || || || ||||||||||| || |||||||| ||||||    
T  11155627 aaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaaccgaggcatcacatccctgt 11155562  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 11200213 - 11200121
Alignment:
Q  76 aacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcaca 168  Q
    ||||||||| ||||||| ||||||||||||||||||||| | |||||| || || || ||||| ||||| |||| |||||| |||||||||||    
T  11200213 aacatccaaacctcttatggagttgatatttggaaaagcttgttgttcgcttacgattgttgctgtgttgttcagcaaaaccgatgcatcaca 11200121  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 11095756 - 11095640
Alignment:
Q  59 gtcttgatttgattgataacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactg 158  Q
    ||||||||||| || | ||||||||| || ||||| ||||| || |||||||  |||||||| ||||| || || ||    ||||| |||||||||||||    
T  11095756 gtcttgatttggtttacaacatccaaaccccttaatgagtttatgtttggaagtgcatcttgctcacttactatggtattagtgttgttcaacaaaactg 11095657  T
Q  159 atgcatcacaaccctgt 175  Q
    || ||||||||||||||    
T  11095656 atccatcacaaccctgt 11095640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 11171335 - 11171239
Alignment:
Q  10 aagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatattt 106  Q
    |||||||||||||||||||||  | ||||| ||||| |||||||||   || ||||||||||| | |||||| || |||||||  |||||| |||||    
T  11171335 aagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgattcacaacatctaaacctcttattgagttgttattt 11171239  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 11191956 - 11192067
Alignment:
Q  62 ttgatttgattgataacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatg 161  Q
    ||||||||||| | || |||||| |||||||  |||||  ||||||| |||||  |||| |||||||| |||||  | | || ||||||||| | |||||    
T  11191956 ttgatttgattcacaatatccaaacctcttattgagtttctatttggcaaagctccttgctcactcacgatagtatcagagtcattcaacaagagtgatg 11192055  T
Q  162 catcacaaccct 173  Q
    ||||||||||||    
T  11192056 catcacaaccct 11192067  T

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