View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0929_low_5 (Length: 604)

Name: NF0929_low_5
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0929_low_5
NF0929_low_5
[»] chr2 (10 HSPs)
chr2 (30-388)||(35215002-35215364)
chr2 (278-394)||(35214609-35214725)
chr2 (447-591)||(14186198-14186342)
chr2 (305-394)||(3148218-3148307)
chr2 (315-388)||(4976449-4976522)
chr2 (315-388)||(4994356-4994429)
chr2 (345-411)||(16043382-16043447)
chr2 (349-388)||(6610021-6610061)
chr2 (349-388)||(15562018-15562058)
chr2 (352-388)||(43743821-43743857)
[»] chr4 (10 HSPs)
chr4 (30-394)||(50657349-50657717)
chr4 (278-394)||(50656982-50657098)
chr4 (282-375)||(38979219-38979312)
chr4 (344-394)||(5929216-5929266)
chr4 (315-385)||(10421525-10421595)
chr4 (350-419)||(16984326-16984395)
chr4 (370-411)||(52720605-52720646)
chr4 (345-388)||(3167451-3167495)
chr4 (316-388)||(6246815-6246887)
chr4 (316-388)||(53664243-53664315)
[»] chr1 (12 HSPs)
chr1 (446-591)||(42862359-42862504)
chr1 (292-394)||(46097418-46097519)
chr1 (372-419)||(41466213-41466260)
chr1 (373-420)||(45320455-45320502)
chr1 (315-388)||(31788220-31788293)
chr1 (370-423)||(41465232-41465285)
chr1 (315-388)||(7463446-7463519)
chr1 (344-394)||(46098188-46098238)
chr1 (315-388)||(11426884-11426957)
chr1 (315-388)||(14924705-14924778)
chr1 (315-388)||(14925286-14925359)
chr1 (372-413)||(35972601-35972642)
[»] chr3 (9 HSPs)
chr3 (309-377)||(51802491-51802559)
chr3 (350-419)||(37242973-37243042)
chr3 (339-394)||(42423195-42423250)
chr3 (350-420)||(34872964-34873034)
chr3 (350-419)||(1259685-1259754)
chr3 (373-411)||(44445498-44445536)
chr3 (315-388)||(38337421-38337494)
chr3 (377-411)||(1258673-1258707)
chr3 (377-411)||(34873693-34873727)
[»] chr5 (4 HSPs)
chr5 (370-411)||(3135931-3135972)
chr5 (324-388)||(472147-472212)
chr5 (347-411)||(38064150-38064214)
chr5 (349-388)||(8320905-8320945)
[»] scaffold0189 (2 HSPs)
scaffold0189 (315-388)||(12803-12876)
scaffold0189 (316-388)||(12215-12287)
[»] chr8 (4 HSPs)
chr8 (315-388)||(43924962-43925035)
chr8 (315-388)||(43972030-43972103)
chr8 (376-411)||(2320220-2320255)
chr8 (315-388)||(43924521-43924594)
[»] chr7 (7 HSPs)
chr7 (350-419)||(31235137-31235206)
chr7 (365-411)||(41236797-41236844)
chr7 (344-394)||(9124369-9124419)
chr7 (347-411)||(8466514-8466578)
chr7 (349-388)||(29006378-29006418)
chr7 (349-388)||(29007176-29007216)
chr7 (350-394)||(46251415-46251459)
[»] chr6 (1 HSPs)
chr6 (328-389)||(34034198-34034259)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 30 - 388
Target Start/End: Original strand, 35215002 - 35215364
Alignment:
Q  30 gttatcccaacacgaattaatggatctatattacgaaatcttaaatcttaaatttcttcagattttgaggaatgggtttgaatattttgaaacaatattg 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  35215002 gttatcccaacacgaattaatggatctatattacgaaatcttaaatcttaaatttcttcagattttgaggaatgagtttgaatattttgaaacagtattg 35215101  T
Q  130 ttgttgtgtttagattgaatatgagattgaaatagaatttgtgttttgttttggatctatgaacacaatttcttatgaacaaaagatgcaattgggaagg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  35215102 ttgttgtgtttagattgaatatgagattgaaatagaatttgtgttttgttttggatctatgaacacaattttttctgaacaaaagatgcaattgggaagg 35215201  T
Q  230 gaagaaggagatttgggaaggtggattagatgtgttgctgct----gatgagtggggatggaggaaagagaagagtggtgagagatagtgtgttgagtgt 325  Q
    |||||||||||||||||||||||||||||||||||||||| |    |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35215202 gaagaaggagatttgggaaggtggattagatgtgttgctggtggtggatgagtggggatggaggaaagagaatagtggtgagagatagtgtgttgagtgt 35215301  T
Q  326 ctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35215302 ctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcctatggtgggaa 35215364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 278 - 394
Target Start/End: Complemental strand, 35214725 - 35214609
Alignment:
Q  278 tggggatggaggaaagagaagagtggtgagagatagtgtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcc 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35214725 tggggatggaggaaagagaagagtggtgagagatagtgtgttgagcgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcc 35214626  T
Q  378 catggtgggaaggtttt 394  Q
    |||||||||||| ||||    
T  35214625 catggtgggaagatttt 35214609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 447 - 591
Target Start/End: Complemental strand, 14186342 - 14186198
Alignment:
Q  447 ggttccatatagaatagacccatcaaaatattggttcatcatgaaccaannnnnnncaacggtttgattatggtagctatccaattttatcatggttcac 546  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||||||||||||||||||    
T  14186342 ggttccgtatagaatagacccatcaaaatattggttcatcatgaaccaatttttttcaacggtttgattatggtacctatccaattttatcatggttcac 14186243  T
Q  547 tgatacaaaatctaaactccaactttatcttctctcattgtacct 591  Q
    | |||  |||| ||||||||||||||||||||| |||||||||||    
T  14186242 tcataataaatttaaactccaactttatcttctgtcattgtacct 14186198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 305 - 394
Target Start/End: Complemental strand, 3148307 - 3148218
Alignment:
Q  305 gagagatagtgtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaaggtttt 394  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  3148307 gagagatagtgtgttgagtgtctataataaaactatgtacttcatttaatctgatggttaaaaacaacttttccatgatgggaagatttt 3148218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 4976449 - 4976522
Alignment:
Q  315 gtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    |||||||||||||||| ||||| ||||| ||  |||| |||| ||||||||||  ||||||||||| |||||||    
T  4976449 gtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaa 4976522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 4994356 - 4994429
Alignment:
Q  315 gtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    |||||||||||||||| ||||| ||||| ||  |||| |||| ||||||||||  ||||||||||| |||||||    
T  4994356 gtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaa 4994429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 411
Target Start/End: Complemental strand, 16043447 - 16043382
Alignment:
Q  345 ttcatttaatctgatggttaaaaacaactttcccatggtgggaaggttttatagcttcccatgtgaa 411  Q
    ||||||| |||| ||||| ||||| |||||| |||||||||||| | |||||| |||||||||||||    
T  16043447 ttcatttgatctaatggtcaaaaa-aacttttccatggtgggaaagctttataccttcccatgtgaa 16043382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 388
Target Start/End: Original strand, 6610021 - 6610061
Alignment:
Q  349 tttaatctgatggttaaaaac-aactttcccatggtgggaa 388  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  6610021 tttaatctaatggttaaaaactaactttcccatggtgggaa 6610061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 388
Target Start/End: Original strand, 15562018 - 15562058
Alignment:
Q  349 tttaatctgatggttaaaaac-aactttcccatggtgggaa 388  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  15562018 tttaatctaatggttaaaaactaactttcccatggtgggaa 15562058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 43743821 - 43743857
Alignment:
Q  352 aatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    ||||||||||||||||| || ||||||||||||||||    
T  43743821 aatctgatggttaaaaaaaagtttcccatggtgggaa 43743857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 30 - 394
Target Start/End: Original strand, 50657349 - 50657717
Alignment:
Q  30 gttatcccaacacgaattaatggatctatattacgaaatcttaaatcttaaatttcttcagattttgaggaatgggtttgaatattttgaaacaatattg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  50657349 gttatcccaacacgaattaatggatctatattacgaaatcttaaatcttaaatttcttcagattttgaggaatgggtttgaatatat-gaaacaatattg 50657447  T
Q  130 ttgttgtgtttagattgaatatgagattgaaatagaatttgtgttttgttttggatctatgaacacaatttcttatgaacaaaagatgcaattgggaagg 229  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  50657448 ttgttgtgtttagattgaatatgagattgaaatagaatttgtattttgttttggatctatgaacacaatttcttctgaacaaaagatgcaattgggaagg 50657547  T
Q  230 gaagaaggagatttgggaaggtggattagatgtgttgctgct----gatgagtggggatggaggaaagagaagagtggtgagagatagtgtgttgagtgt 325  Q
    |||||||||||||||||||||||||||||||||||||| | |    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  50657548 gaagaaggagatttgggaaggtggattagatgtgttgcagatggtggatgagtggggatggatgaaagagaagagtgatgagagatagtgtgttgagtgt 50657647  T
Q  326 ctatgataaaactatgtacttcatttaatctgatggtt-aaaaacaactttcccatggtgggaaggtttt 394  Q
    ||||||||||| ||||||||||||||||||||||| || ||||| |||||| ||||||||| ||| ||||    
T  50657648 ctatgataaaattatgtacttcatttaatctgatgattaaaaaataacttttccatggtggaaagatttt 50657717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 278 - 394
Target Start/End: Complemental strand, 50657098 - 50656982
Alignment:
Q  278 tggggatggaggaaagagaagagtggtgagagatagtgtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcc 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  50657098 tggggatggaggaaagagaagagtggtgagagatagtgtgttgagtgtttatgataaaactatgtacttcatttaatctgatggttaaaaataacttttc 50656999  T
Q  378 catggtgggaaggtttt 394  Q
    |||||||||||| ||||    
T  50656998 catggtgggaagatttt 50656982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 282 - 375
Target Start/End: Complemental strand, 38979312 - 38979219
Alignment:
Q  282 gatggaggaaagagaagagtggtgagagatagtgtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaacttt 375  Q
    ||||||||| |||||||| ||||  |||||||||| |||| ||||||| |||||||||||| ||||| ||||||| |||| | |||||||||||    
T  38979312 gatggaggagagagaagaatggtaggagatagtgtattgaatgtctataataaaactatgttcttcacttaatctaatggcttaaaacaacttt 38979219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 394
Target Start/End: Complemental strand, 5929266 - 5929216
Alignment:
Q  344 cttcatttaatctgatggttaaaaacaactttcccatggtgggaaggtttt 394  Q
    ||||| ||||||| |||||||||||||  ||||| ||||||||||||||||    
T  5929266 cttcaattaatctaatggttaaaaacatttttcctatggtgggaaggtttt 5929216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 385
Target Start/End: Original strand, 10421525 - 10421595
Alignment:
Q  315 gtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgg 385  Q
    |||||||||||||||||||||| ||||| ||  ||||||||| | ||| ||||  | ||||||||||||||    
T  10421525 gtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgg 10421595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 419
Target Start/End: Complemental strand, 16984395 - 16984326
Alignment:
Q  350 ttaatctgatggttaaaaacaactttcccatggtgggaaggttttatagcttcccatgtgaacaaccacc 419  Q
    ||||||| |||| |||||  || |||||||||| |||||||||| ||| |||||||||||| || |||||    
T  16984395 ttaatctaatggctaaaacaaattttcccatggggggaaggtttcataccttcccatgtgagcagccacc 16984326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 52720646 - 52720605
Alignment:
Q  370 aactttcccatggtgggaaggttttatagcttcccatgtgaa 411  Q
    |||||||| |||||||||| |||||||| |||||||||||||    
T  52720646 aactttcctatggtgggaatgttttataccttcccatgtgaa 52720605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 3167451 - 3167495
Alignment:
Q  345 ttcatttaatctgatggttaaaa-acaactttcccatggtgggaa 388  Q
    |||||||||||  |||||||||| |||||||||||||||||||||    
T  3167451 ttcatttaatcaaatggttaaaaaacaactttcccatggtgggaa 3167495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 6246887 - 6246815
Alignment:
Q  316 tgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    ||||||||||||||||||||| ||||| ||  |  | |||| ||||| ||||  |||||||||||||||||||    
T  6246887 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaactttcccatggtgggaa 6246815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 53664315 - 53664243
Alignment:
Q  316 tgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    |||||||||||||||||||||| |||| ||  |||| |||| ||||| || |   ||||||||||||||||||    
T  53664315 tgttgagtgtctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatggtgggaa 53664243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 446 - 591
Target Start/End: Original strand, 42862359 - 42862504
Alignment:
Q  446 tggttccatatagaatagacccatcaaaatattggttcatcatgaaccaannnnnnncaacggtttgattatggtagctatccaattttatcatggttca 545  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| |||||||||||||||||||||||    
T  42862359 tggttccgtatagaatagacccatcaaaatattggttcatcatgaaccaatttttttcaacggtttgattatggtacctatccaattttatcatggttca 42862458  T
Q  546 ctgatacaaaatctaaactccaactttatcttctctcattgtacct 591  Q
    || |||| ||||||||||||||||||||||||||||||||||||||    
T  42862459 ctcatactaaatctaaactccaactttatcttctctcattgtacct 42862504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 292 - 394
Target Start/End: Complemental strand, 46097519 - 46097418
Alignment:
Q  292 agagaagagtggtgagagatagtgtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaaggt 391  Q
    |||||| | |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| |  |||||||||||| |||||||||| ||    
T  46097519 agagaaaaatggtaagagatagtgtgttgagtgtctataataaaactatgttcttcatttaatctaatggct-taaacaactttcctatggtgggaaagt 46097421  T
Q  392 ttt 394  Q
    |||    
T  46097420 ttt 46097418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 41466260 - 41466213
Alignment:
Q  372 ctttcccatggtgggaaggttttatagcttcccatgtgaacaaccacc 419  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||    
T  41466260 ctttcccatggtgggaaggttttataccttcccatgtgaacagccacc 41466213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 420
Target Start/End: Complemental strand, 45320502 - 45320455
Alignment:
Q  373 tttcccatggtgggaaggttttatagcttcccatgtgaacaaccacct 420  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  45320502 tttcccatggtgggaaggttttataccttcccatgtgaacagccacct 45320455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 31788220 - 31788293
Alignment:
Q  315 gtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    |||||||||||||||| ||||| ||||| ||  |||| |||| ||||||||||  |||||||||||||||||||    
T  31788220 gtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaa 31788293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 370 - 423
Target Start/End: Complemental strand, 41465285 - 41465232
Alignment:
Q  370 aactttcccatggtgggaaggttttatagcttcccatgtgaacaaccacctaaa 423  Q
    |||||||||||||||||||||||||| | ||||||||||||| | |||||||||    
T  41465285 aactttcccatggtgggaaggttttacaccttcccatgtgaaaagccacctaaa 41465232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 7463519 - 7463446
Alignment:
Q  315 gtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    |||||||  ||||||||||||||| ||| ||| ||||||||| ||||| ||||  | |||||||||||||||||    
T  7463519 gtgttgatggtctatgataaaactgtgttctttatttaatctaatggtcaaaattagctttcccatggtgggaa 7463446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 46098188 - 46098238
Alignment:
Q  344 cttcatttaatctgatggttaaaaacaactttcccatggtgggaaggtttt 394  Q
    ||||||||||||| |||||||| | ||  ||||||||||||||||||||||    
T  46098188 cttcatttaatctaatggttaatagcacttttcccatggtgggaaggtttt 46098238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 11426957 - 11426884
Alignment:
Q  315 gtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    |||||||  ||||||||||||||| ||| ||| | ||||||| ||||| ||||  | |||||||||||||||||    
T  11426957 gtgttgatggtctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaa 11426884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 14924778 - 14924705
Alignment:
Q  315 gtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    |||||||||||||||||||||| ||||| ||  ||||||| | | ||| ||||  | |||||||||||||||||    
T  14924778 gtgttgagtgtctatgataaaaatatgttctctatttaatttaacggtcaaaattagctttcccatggtgggaa 14924705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 14925286 - 14925359
Alignment:
Q  315 gtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    |||||||||||||||||||||| ||||| ||  | || |||| ||||| ||||  | |||||||||||||||||    
T  14925286 gtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagctttcccatggtgggaa 14925359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 35972601 - 35972642
Alignment:
Q  372 ctttcccatggtgggaaggttttatagcttcccatgtgaaca 413  Q
    ||||||||||||||||| | |||||| |||||||||||||||    
T  35972601 ctttcccatggtgggaaagctttataccttcccatgtgaaca 35972642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 51802491 - 51802559
Alignment:
Q  309 gatagtgtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcc 377  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  51802491 gatagtgtgttgagtgtctgtgataaaactatgtacttcatttaatcttatggttaaaaataactttcc 51802559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 350 - 419
Target Start/End: Original strand, 37242973 - 37243042
Alignment:
Q  350 ttaatctgatggttaaaaacaactttcccatggtgggaaggttttatagcttcccatgtgaacaaccacc 419  Q
    ||||||| |||| |||||  || ||||||||||||||||||||||||| |||||||||||||||||||||    
T  37242973 ttaatctaatggctaaaacaaattttcccatggtgggaaggttttataccttcccatgtgaacaaccacc 37243042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 42423195 - 42423250
Alignment:
Q  339 atgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaaggtttt 394  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  42423195 atgtactttatttaatctgatggttaaaaataactttcccatggtgggaagatttt 42423250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 350 - 420
Target Start/End: Complemental strand, 34873034 - 34872964
Alignment:
Q  350 ttaatctgatggttaaaaacaactttcccatggtgggaaggttttatagcttcccatgtgaacaaccacct 420  Q
    ||||||| |||| |||||  || ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  34873034 ttaatctaatggctaaaacaaattttcccatggtgggaaggttttataccttcccatgtgaacagccacct 34872964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 419
Target Start/End: Original strand, 1259685 - 1259754
Alignment:
Q  350 ttaatctgatggttaaaaacaactttcccatggtgggaaggttttatagcttcccatgtgaacaaccacc 419  Q
    ||||||| |||| |||||  || |||| |||||||||||||||||||| |||||||||||||||||||||    
T  1259685 ttaatctaatggctaaaacaaattttctcatggtgggaaggttttataccttcccatgtgaacaaccacc 1259754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 44445536 - 44445498
Alignment:
Q  373 tttcccatggtgggaaggttttatagcttcccatgtgaa 411  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  44445536 tttcccatggtgggaaggttttatatcttcccatgtgaa 44445498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 38337421 - 38337494
Alignment:
Q  315 gtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    |||||||||||||||||||||| ||||| ||  ||||||||| | ||| ||||  | |||||||||||||||||    
T  38337421 gtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaa 38337494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 411
Target Start/End: Complemental strand, 1258707 - 1258673
Alignment:
Q  377 ccatggtgggaaggttttatagcttcccatgtgaa 411  Q
    ||||||||||||||||||||| |||||||||||||    
T  1258707 ccatggtgggaaggttttataccttcccatgtgaa 1258673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 411
Target Start/End: Original strand, 34873693 - 34873727
Alignment:
Q  377 ccatggtgggaaggttttatagcttcccatgtgaa 411  Q
    ||||||||||||||||||||| |||||||||||||    
T  34873693 ccatggtgggaaggttttataccttcccatgtgaa 34873727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 3135972 - 3135931
Alignment:
Q  370 aactttcccatggtgggaaggttttatagcttcccatgtgaa 411  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  3135972 aactttcccatggtgggaaggttttataccttcccatgtgaa 3135931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 324 - 388
Target Start/End: Complemental strand, 472212 - 472147
Alignment:
Q  324 gtctatgataaaactatgtacttcatttaatctgatggtt-aaaaacaactttcccatggtgggaa 388  Q
    |||||| ||||| |||||| | |||| ||||||||||||| |||||||||||||| ||||||||||    
T  472212 gtctatcataaagctatgttcatcatataatctgatggtttaaaaacaactttcctatggtgggaa 472147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 411
Target Start/End: Complemental strand, 38064214 - 38064150
Alignment:
Q  347 catttaatctgatggttaaaaacaactttcccatggtgggaaggttttatagcttcccatgtgaa 411  Q
    |||||||||| ||||||||||  ||||||||||||||||||| |||||    |||||||||||||    
T  38064214 catttaatctaatggttaaaagtaactttcccatggtgggaaagttttcacccttcccatgtgaa 38064150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 388
Target Start/End: Complemental strand, 8320945 - 8320905
Alignment:
Q  349 tttaatctgatggttaaaaac-aactttcccatggtgggaa 388  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  8320945 tttaatctaatggttaaaaactaactttcccatggtgggaa 8320905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 12803 - 12876
Alignment:
Q  315 gtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    |||||||||||||||||||||| ||||| ||  | || |||| ||||| ||||  |||||||||||||||||||    
T  12803 gtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattaactttcccatggtgggaa 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 12287 - 12215
Alignment:
Q  316 tgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    ||||||||||||||||||||| ||||| ||  ||||||||| | ||| ||||  || |||| |||||||||||    
T  12287 tgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaattttctcatggtgggaa 12215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 43924962 - 43925035
Alignment:
Q  315 gtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    |||||||||||||||||||||| ||||| ||  ||||||||| | ||| ||||  ||||||| |||||||||||    
T  43924962 gtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctcatggtgggaa 43925035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 43972030 - 43972103
Alignment:
Q  315 gtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    |||||||||||||||| ||||| ||||| ||  |||| |||| ||||||||||  ||||||||||| |||||||    
T  43972030 gtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaa 43972103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 411
Target Start/End: Original strand, 2320220 - 2320255
Alignment:
Q  376 cccatggtgggaaggttttatagcttcccatgtgaa 411  Q
    |||||||||||||||||||||| |||||||||||||    
T  2320220 cccatggtgggaaggttttataccttcccatgtgaa 2320255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 43924594 - 43924521
Alignment:
Q  315 gtgttgagtgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaa 388  Q
    ||||||||||| |||||||||| ||||| ||  ||||||||| | ||| ||||  | |||||||||||||||||    
T  43924594 gtgttgagtgtttatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaa 43924521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 350 - 419
Target Start/End: Original strand, 31235137 - 31235206
Alignment:
Q  350 ttaatctgatggttaaaaacaactttcccatggtgggaaggttttatagcttcccatgtgaacaaccacc 419  Q
    ||||||| |||| |||||  || ||| | ||||||||||||||||||| ||||||||||||||| |||||    
T  31235137 ttaatctaatggctaaaacaaatttttctatggtgggaaggttttataccttcccatgtgaacagccacc 31235206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 41236844 - 41236797
Alignment:
Q  365 aaaacaac-tttcccatggtgggaaggttttatagcttcccatgtgaa 411  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||    
T  41236844 aaaacaacatttcccatggtgggaaggttttacaccttcccatgtgaa 41236797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 9124369 - 9124419
Alignment:
Q  344 cttcatttaatctgatggttaaaaacaactttcccatggtgggaaggtttt 394  Q
    ||||| ||||||| |||||||||| ||  ||||||||||||||||||||||    
T  9124369 cttcaattaatctaatggttaaaagcatttttcccatggtgggaaggtttt 9124419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 411
Target Start/End: Original strand, 8466514 - 8466578
Alignment:
Q  347 catttaatctgatggttaaaaacaactttcccatggtgggaaggttttatagcttcccatgtgaa 411  Q
    |||||||||| ||||||||||  |||||||||||||||| || |||||    |||||||||||||    
T  8466514 catttaatctaatggttaaaagtaactttcccatggtggaaaagttttcacccttcccatgtgaa 8466578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 388
Target Start/End: Complemental strand, 29006418 - 29006378
Alignment:
Q  349 tttaatctgatggttaaaaac-aactttcccatggtgggaa 388  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  29006418 tttaatctaatggttaaaaactaactttcccatggtgggaa 29006378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 388
Target Start/End: Original strand, 29007176 - 29007216
Alignment:
Q  349 tttaatctgatggttaaaaac-aactttcccatggtgggaa 388  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  29007176 tttaatctaatggttaaaaactaactttcccatggtgggaa 29007216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 46251459 - 46251415
Alignment:
Q  350 ttaatctgatggttaaaaacaactttcccatggtgggaaggtttt 394  Q
    ||||||| |||| ||||| |||||||||||||||||||| |||||    
T  46251459 ttaatctaatggctaaaatcaactttcccatggtgggaaagtttt 46251415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 34034259 - 34034198
Alignment:
Q  328 atgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatggtgggaag 389  Q
    ||||||||||||||| ||  |||| |||  |||||| |||| ||||||||||||||||||||    
T  34034259 atgataaaactatgttctctatttgatccaatggtttaaaataactttcccatggtgggaag 34034198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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