View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0929_low_6 (Length: 486)
Name: NF0929_low_6
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0929_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 84 - 353
Target Start/End: Complemental strand, 20488897 - 20488628
Alignment:
| Q |
84 |
caatatcgtgtgcgtattggacactcctatgtgtcggacactagacactccttcgatgtgaagtgtaagtacttaatgcatatattcacatcatgctggt |
183 |
Q |
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| T |
20488897 |
caatatcatgtgggtattggacactcttatgtgtcggacactagacacaccttcgatgtgaagtgtaagtacttaatgcatatattcacatcattctggt |
20488798 |
T |
|
| Q |
184 |
cctacacaaaaactcctcctcatcatataaaatcatggctagagttgttgattattctaaactgaccatcccacactactctcaatcatttcaaacccct |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20488797 |
cctacacaaaaactcctcctcatcatataaaatcatggctagagttgttgattattctaaactgaccatcccacactactctcaatcatttcaaaaccct |
20488698 |
T |
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| Q |
284 |
ttgatatcatcttaccatccttgatatagcctcatcctcttgttacatattcctaaccatacttttcaaa |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20488697 |
ttgatatcatcttaccatccttgatatagcctcatcctcttgttacatattcctaaccatacttttcaaa |
20488628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 482
Target Start/End: Complemental strand, 32940923 - 32940866
Alignment:
| Q |
424 |
caaaattaagtctttgctagaaaaccccaccccaagcataacgggtgttttgggctgca |
482 |
Q |
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|||||||||| | ||| |||||||||| ||||||||| |||||||||||||||| |||| |
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| T |
32940923 |
caaaattaagacattgttagaaaaccc-accccaagcttaacgggtgttttgggttgca |
32940866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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