View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0929_low_7 (Length: 486)

Name: NF0929_low_7
Description: NF0929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0929_low_7
NF0929_low_7
[»] chr7 (1 HSPs)
chr7 (30-425)||(46818630-46819025)
[»] chr1 (2 HSPs)
chr1 (134-276)||(36882711-36882853)
chr1 (315-383)||(36882892-36882960)


Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 30 - 425
Target Start/End: Complemental strand, 46819025 - 46818630
Alignment:
Q  30 gtggcatcgattgccatcgaaattaaactacatgaaatcatttaagcaagtaggtaacaatcataagcacgaggtcccgaatgatgtgtatactttacat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46819025 gtggcatcgattgccatcgaaattaaactacatgaaatcatttaagcaagtaggtaacaatcataagcacgaggtcccgaatgatgtgtatactttacat 46818926  T
Q  130 tatctgggcttgaaaccatggatgtgttatagggattatgattgcaattgggacatgcaaggttatgatatatttgctagtgactcagctaatgaagtgt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46818925 tatctgggcttgaaaccatggatgtgttatagggattatgattgcaattgggacatgcaaggttatgatatatttgctagtgactcagctaatgaagtat 46818826  T
Q  230 ggtggaaagtttatgatactatgccaaaacatttgcaatcatattgttcccttacaaagcaatcaaatgaaagaattgtcaagaatagaaaaatagcaag 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46818825 ggtggaaagtttatgatactatgccaaaacatttgcaatcatattgttcccttacaaagcaatcaaatgaaagaattgtcaagaatagaaaaatagcaag 46818726  T
Q  330 aaatgctattttctctgatggacattggagaattgaggttaaggatcctagaaggttgaactacatagattagattataatattatggtgtacaag 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  46818725 aaatgctattttctctgatggacattggagaattgaggttaaggatcctagaaggttgaactacatagattagattataataacatggtgtacaag 46818630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 276
Target Start/End: Original strand, 36882711 - 36882853
Alignment:
Q  134 tgggcttgaaaccatggatgtgttatagggattatgattgcaattgggacatgcaaggttatgatatatttgctagtgactcagctaatgaagtgtggtg 233  Q
    |||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||  ||  |   || | ||||| ||||| |  ||| |  || |||||||    
T  36882711 tgggtttgaagccatggatgtgttatagagattatgattgtaattgggacatgagagaattacatgtttttgcgagtgatttggctcacaaaatgtggtg 36882810  T
Q  234 gaaagtttatgatactatgccaaaacatttgcaatcatattgt 276  Q
    ||| |||||||||||||||||| || | |||||| ||||||||    
T  36882811 gaaggtttatgatactatgccacaaaagttgcaagcatattgt 36882853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 36882892 - 36882960
Alignment:
Q  315 tagaaaaatagcaagaaatgctattttctctgatggacattggagaattgaggttaaggatcctagaag 383  Q
    |||||||| |||||||||||||| |||   |||||| |||||||  ||| |||||||||||||||||||    
T  36882892 tagaaaaagagcaagaaatgctaatttgagtgatgggcattggaagattaaggttaaggatcctagaag 36882960  T

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