View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0930_high_14 (Length: 251)
Name: NF0930_high_14
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0930_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 27835435 - 27835235
Alignment:
| Q |
40 |
taaggtgatacatttcttcatctggtttaatgccataactttcctcaatatttatattttcccaatctttattaaattgatgaagatttttgtatttcaa |
139 |
Q |
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| T |
27835435 |
taaggtgatacatttcttcatctggtttaatgccataactttcctcaatatttatattttcccaatctttattaaattgatgaagatttttgtatttcaa |
27835336 |
T |
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| Q |
140 |
gttttacgatagaaaaatatttttacacgaccttatttatagccaaaaataaattagtgaatgatattttatattagaaatattttaattataatcaacc |
239 |
Q |
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| T |
27835335 |
gttttacgatagaaaagtatttttacatgaccttatttatagccaaaaataaattagtgaatgatattttatattagaaatattttaattataatcaacc |
27835236 |
T |
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| Q |
240 |
g |
240 |
Q |
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| T |
27835235 |
g |
27835235 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 24649224 - 24649313
Alignment:
| Q |
68 |
aatgccataactttcctcaatatttatattttcccaatctttattaaattgatgaagatttttgtatttcaagttttacgatagaaaaat |
157 |
Q |
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| T |
24649224 |
aatgccataacttttctcaataattatattttcctgatcactattaaatatattaatttttctgtgtttcaagttttacaatagaaaaat |
24649313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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