View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0930_low_18 (Length: 321)
Name: NF0930_low_18
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0930_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 21651977 - 21651698
Alignment:
| Q |
13 |
aatatcaggatgcaaaaaccttttagcataccacctgcataaaacagtataagaagtaaaagcttagatacgacgaactgcttcaagaattctcaagttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
21651977 |
aatatcaggatgcaaaaaccttttagcataccacctgcataaaacagtataagaagtaaaagcttagatatgacaaactgcttcaagaattctcaagttt |
21651878 |
T |
|
| Q |
113 |
tatttaagagcgaaaaacctcagcctgtacattgtcaaccaaaaatcgaggggaaagggatgnnnnnnncataccatttggtttgtttcctagcactaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21651877 |
tatttaagagcgaaaaacctcagcctgtacattgtcaaccaaaaatcgaggggaaagggatgaaaaaaacataccatttggtttgtttcctagcactaat |
21651778 |
T |
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| Q |
213 |
atggattactttctttgaccattcgtatcgatcccattcactagttcgtccatcataatgaaagagcaaaatctcaaaat |
292 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21651777 |
atggattactttctttgaccattcatatcgatcccattcactagttcgtccatcataatgaaagagcaaaatgtcaaaat |
21651698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 40420101 - 40420202
Alignment:
| Q |
183 |
ataccatttggtttgtttcctagcactaatatggattactttctttgaccattcgtatcgatcccattcactagttcgtccatcataatgaaagagcaaa |
282 |
Q |
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||||||||| ||||||||||| ||||||| ||||||| | ||||||||||| || || ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40420101 |
ataccattttgtttgtttccttgcactaacatggattgcattctttgaccactcaaattgatcccattcactagttcgaccatcataatgaaagagcaaa |
40420200 |
T |
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| Q |
283 |
at |
284 |
Q |
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|| |
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| T |
40420201 |
at |
40420202 |
T |
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