View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0930_low_19 (Length: 320)
Name: NF0930_low_19
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0930_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 31683149 - 31683016
Alignment:
| Q |
105 |
tcccaatctagtatcttttgatgttacacgggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttccca |
204 |
Q |
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| T |
31683149 |
tcccaatctagtatcttttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttccca |
31683050 |
T |
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| Q |
205 |
gatgaaggatttcatacaccaaacctacatgcct |
238 |
Q |
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| T |
31683049 |
gatgaaggatttcatacaccaaacctacgtgcct |
31683016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 31895283 - 31895416
Alignment:
| Q |
105 |
tcccaatctagtatcttttgatgttacacgggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttccca |
204 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31895283 |
tcccaatctagtatcttttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttccca |
31895382 |
T |
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| Q |
205 |
gatgaaggatttcatacaccaaacctacatgcct |
238 |
Q |
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| T |
31895383 |
gatgaaggatttcatacaccaaacctacgtgcct |
31895416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 31899867 - 31900000
Alignment:
| Q |
105 |
tcccaatctagtatcttttgatgttacacgggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttccca |
204 |
Q |
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| T |
31899867 |
tcccaatctagtatcttttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttccca |
31899966 |
T |
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| Q |
205 |
gatgaaggatttcatacaccaaacctacatgcct |
238 |
Q |
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| T |
31899967 |
gatgaaggatttcatacaccaaacctacgtgcct |
31900000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 31915576 - 31915709
Alignment:
| Q |
105 |
tcccaatctagtatcttttgatgttacacgggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttccca |
204 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31915576 |
tcccaatctagtatcttttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttccca |
31915675 |
T |
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| Q |
205 |
gatgaaggatttcatacaccaaacctacatgcct |
238 |
Q |
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| T |
31915676 |
gatgaaggatttcatacaccaaacctacgtgcct |
31915709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 31949224 - 31949357
Alignment:
| Q |
105 |
tcccaatctagtatcttttgatgttacacgggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttccca |
204 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31949224 |
tcccaatctagtatcttttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttccca |
31949323 |
T |
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| Q |
205 |
gatgaaggatttcatacaccaaacctacatgcct |
238 |
Q |
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| T |
31949324 |
gatgaaggatttcatacaccaaacctacgtgcct |
31949357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 105 - 234
Target Start/End: Complemental strand, 52652017 - 52651883
Alignment:
| Q |
105 |
tcccaatctagtatcttttgatgttacac-----gggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctt |
199 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||| |
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| T |
52652017 |
tcccaatctagtatcttttgatgttacagtacaggggtgtataagggtgattttgctttggagtgttttcaaataagagattgtcctggattgacgtctt |
52651918 |
T |
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| Q |
200 |
tcccagatgaaggatttcatacaccaaacctacat |
234 |
Q |
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| T |
52651917 |
tcccagatgaaggatttcatacaccaaacctacat |
52651883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 16062213 - 16062145
Alignment:
| Q |
163 |
tgttttgaaataagagattgccctggattgacgtctttcccagatgaaggatttcatacaccaaaccta |
231 |
Q |
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| T |
16062213 |
tgttttgaaactagagattgtcctggattgacgtctttcacacatgaaggatttcatacaccaaaccta |
16062145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 16058068 - 16058000
Alignment:
| Q |
163 |
tgttttgaaataagagattgccctggattgacgtctttcccagatgaaggatttcatacaccaaaccta |
231 |
Q |
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| T |
16058068 |
tgttttgaaattagagattgtcctggattggtgtctttcacacatgaaggatttcatacaccacaccta |
16058000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 16036107 - 16036036
Alignment:
| Q |
163 |
tgttttgaaataagagattgccctggattgacgtctttcccagatgaaggatttcatacaccaaacctacat |
234 |
Q |
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| T |
16036107 |
tgttttgaaactagagattgtcctagattggtgtctttcacacatgaaggatttcatacaccaaacctacat |
16036036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 16040186 - 16040115
Alignment:
| Q |
163 |
tgttttgaaataagagattgccctggattgacgtctttcccagatgaaggatttcatacaccaaacctacat |
234 |
Q |
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| T |
16040186 |
tgttttgaaactagagattgtcctggattggtgtctttcacacatgaaggatttcatacaccacacctacat |
16040115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 16046691 - 16046620
Alignment:
| Q |
163 |
tgttttgaaataagagattgccctggattgacgtctttcccagatgaaggatttcatacaccaaacctacat |
234 |
Q |
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| T |
16046691 |
tgttttgaaactagagattgtcctagattggtgtctttcacacatgaaggatttcatacaccaaacctacat |
16046620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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