View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0930_low_2 (Length: 618)

Name: NF0930_low_2
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0930_low_2
NF0930_low_2
[»] chr7 (1 HSPs)
chr7 (26-608)||(35671640-35672219)
[»] chr6 (1 HSPs)
chr6 (103-151)||(25207416-25207464)
[»] chr5 (1 HSPs)
chr5 (103-151)||(9634864-9634912)


Alignment Details
Target: chr7 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 26 - 608
Target Start/End: Complemental strand, 35672219 - 35671640
Alignment:
Q  26 agcttcctctttagctcatccattaaatttctttgctccttgctccacaaaactttcctctgaaaaataacagtttgttcaatgttgtcaatcgcaggtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35672219 agcttcctctttagctcatccattaaatttctttgctccttgctccacaaaactttcctctgaaaaataacggtttgttcaatgttgtcaatcgcaggtt 35672120  T
Q  126 acagaaaataacaatttgttcaaatttcattacactatcgcgcaactatttaacaacttcaattatataccttgtgcttcagaagacttgataaactctt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35672119 acagaaaataacaatttgttcaaatttcattacactatcgcgcaactatttaacaacttcaattatataccttgtgcttcagaagacttgataaactctt 35672020  T
Q  226 caagctgagcttcaatcgaaatatcttcatccgcatcaagatcaaacgcatcaggaagcaaatcaacgacgacatcattaccgtcaaactcatctacatc 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  35672019 caagctgagcttcaatcgaaatatcttcatccgcatcaagatcaaacgcatcaggaagcaaatcaacgac---atcattaccgtcaaactcatctacatc 35671923  T
Q  326 atcataaaagccttcgtcatcatgttgctggctaagccagtaatcatggtaccatttcagtgttgtcaccagctgccaccattctggagaaaaatcctcg 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35671922 atcataaaagccttcgtcatcatgttgctggctaagccagtaatcatggtaccatttcagtgttgtcaccagctgccaccattccggagaaaaatcctcg 35671823  T
Q  426 acatagcgaaatgcagctggaatgtaaagtggtgcattagggtttagtgttgatcttcctcctgaaactaatgccatcttgaatcaccttcactcttatc 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35671822 acatagcgaaatgcagctggaatgtaaagtggtgcattagggtttagtgttgatcttcctcctgaaactaatgccatcttgaatcaccttcactcttatc 35671723  T
Q  526 actttttccttaatctacaccattaatcaacaattaacaatgttaatacaactcaaaatttcaatcataatcattaagtataa 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35671722 actttttccttaatctacaccattaatcaacaattaacaatgttaatacaactcaaaatttcaatcataatcattaagtataa 35671640  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 25207416 - 25207464
Alignment:
Q  103 ttcaatgttgtcaatcgcaggttacagaaaataacaatttgttcaaatt 151  Q
    |||||||||||| ||||||| || | |||||||||| ||||||||||||    
T  25207416 ttcaatgttgtcgatcgcagattgcggaaaataacagtttgttcaaatt 25207464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 9634864 - 9634912
Alignment:
Q  103 ttcaatgttgtcaatcgcaggttacagaaaataacaatttgttcaaatt 151  Q
    ||||||||||||||| |||| |||||||||||| |  ||||||||||||    
T  9634864 ttcaatgttgtcaattgcagattacagaaaatagcggtttgttcaaatt 9634912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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