View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0930_low_22 (Length: 301)
Name: NF0930_low_22
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0930_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 3038792 - 3038554
Alignment:
| Q |
1 |
tttccactcttgacctcacttccagcctttgaagaacttggtgtcttaacctttgcgacttcaacctcttttgatgaatcatcagagttctcattatcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3038792 |
tttccactcttgacctcacttccagcctttgaagaacttggtgtcttaacctttgcgacttcaacctcttttgatgaatcatcagagttctcattatcag |
3038693 |
T |
|
| Q |
101 |
aatcttcttcctgcaacaaattaaatttcaccttggcagtactcttggtggattttgtcttggaggaagatgcaatcttaggtgttccttgctttgattt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3038692 |
aatcttcttcctgcaacaaattaaatttcaccttggcagtactcttggtggattttgtcttggaggaagatgcaatcttaggtgttccttgcttggattt |
3038593 |
T |
|
| Q |
201 |
tccacttttcagagtttcttgcttagacttggcaacagc |
239 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
3038592 |
tccacttttcagagtttcttgcttagacttggcagcagc |
3038554 |
T |
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