View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0930_low_23 (Length: 292)
Name: NF0930_low_23
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0930_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 30 - 286
Target Start/End: Complemental strand, 41080820 - 41080564
Alignment:
| Q |
30 |
ccttctttaacttcaagaatcattaaccattacagaatgagagaggatataaaagcttataacctatctggtatgggttgtagtgctagtctaatctcat |
129 |
Q |
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| T |
41080820 |
ccttctttaacttcaagaatcattaaccattacaaaatgagagaggatataaaagcttataacctatctggtatgggttgtagtgctagtctaatctcat |
41080721 |
T |
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| Q |
130 |
tagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctcttagtacaaattggtattcaggaatcaatag |
229 |
Q |
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| T |
41080720 |
tagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctcttagtacaaattggtattcaggaatcaatag |
41080621 |
T |
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| Q |
230 |
gtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaattcatctcac |
286 |
Q |
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| T |
41080620 |
gtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaattcttctcac |
41080564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 97 - 279
Target Start/End: Complemental strand, 23078267 - 23078085
Alignment:
| Q |
97 |
ctggtatgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtc |
196 |
Q |
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| T |
23078267 |
ctggaatgggttgtagtgctagtcttatatcagtagatattgttaaaaacattttcaaatcacaaagaaacaagttagcacttttggtcacatcagagtc |
23078168 |
T |
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| Q |
197 |
tcttagtacaaattggtattcaggaatcaataggtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaattc |
279 |
Q |
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| T |
23078167 |
tcttagtccaaattggtatcctggtagtaatagatcaatgatcttagccaattgtctttttcgcaccggcggttgtgccattc |
23078085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 271
Target Start/End: Complemental strand, 23073726 - 23073485
Alignment:
| Q |
30 |
ccttctttaacttcaagaatcattaaccattacagaatgagagaggatataaaagcttataacctatctggtatgggttgtagtgctagtctaatctcat |
129 |
Q |
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||||||||| |||| |||||||||||| ||||| ||||||| | || |||||| || || || | || |||||||||||||| ||||| || |||| |
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| T |
23073726 |
ccttctttatcttcgcgaatcattaaccgttacaaaatgagacacgacgtaaaagtgtacaatctcaccggaatgggttgtagtgcaagtcttatatcat |
23073627 |
T |
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| Q |
130 |
tagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctcttagtacaaattggtattcaggaatcaatag |
229 |
Q |
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| T |
23073626 |
tagatattgttaaaaacattttcaaatcacagagaaataagttagcacttttggtcacatcagagtctcttagtccaaattggtatactggcaatgatag |
23073527 |
T |
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| Q |
230 |
gtcaatgattcttgcaaattgtcttttccgtaccggcggttg |
271 |
Q |
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| T |
23073526 |
atcaatgatcctagccaactgtcttttccgttccggcggttg |
23073485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 23110707 - 23110820
Alignment:
| Q |
102 |
atgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctctta |
201 |
Q |
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|||||||| ||||||||||| || ||| |||| || || ||||||||||||| ||| ||| || |||| || |||||| | ||||||||||||||| |
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| T |
23110707 |
atgggttgcagtgctagtcttatttcactagatattgttaaaaacattttcaaatcacaaagaaataagttagcacttttggtcacatcagagtctcttt |
23110806 |
T |
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| Q |
202 |
gtacaaattggtat |
215 |
Q |
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| T |
23110807 |
gtccaaattggtat |
23110820 |
T |
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