View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0930_low_26 (Length: 273)

Name: NF0930_low_26
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0930_low_26
NF0930_low_26
[»] chr6 (11 HSPs)
chr6 (33-222)||(2430396-2430585)
chr6 (33-120)||(24386343-24386429)
chr6 (36-116)||(9474534-9474614)
chr6 (40-111)||(20084581-20084651)
chr6 (33-109)||(11108072-11108147)
chr6 (51-107)||(7915606-7915662)
chr6 (33-120)||(2835094-2835180)
chr6 (33-107)||(22608270-22608343)
chr6 (40-110)||(30056027-30056096)
chr6 (33-82)||(10304630-10304678)
chr6 (62-102)||(7706773-7706813)
[»] chr5 (10 HSPs)
chr5 (33-111)||(15221696-15221773)
chr5 (33-111)||(43262827-43262904)
chr5 (40-91)||(19621606-19621656)
chr5 (40-111)||(33958881-33958950)
chr5 (40-107)||(35922617-35922683)
chr5 (58-111)||(622614-622667)
chr5 (41-106)||(33959114-33959178)
chr5 (40-111)||(36169306-36169376)
chr5 (40-111)||(42034895-42034965)
chr5 (33-107)||(13312730-13312799)
[»] chr7 (10 HSPs)
chr7 (33-120)||(21548584-21548669)
chr7 (40-111)||(28804887-28804957)
chr7 (33-97)||(22033192-22033254)
chr7 (42-98)||(26240202-26240257)
chr7 (33-102)||(21589755-21589823)
chr7 (35-107)||(31303362-31303433)
chr7 (40-111)||(18312965-18313035)
chr7 (40-107)||(28805157-28805223)
chr7 (40-107)||(32964662-32964728)
chr7 (41-122)||(20556909-20556989)
[»] chr4 (12 HSPs)
chr4 (33-127)||(1966719-1966811)
chr4 (40-117)||(14351201-14351277)
chr4 (40-107)||(16583505-16583571)
chr4 (40-111)||(19596922-19596992)
chr4 (33-111)||(17633242-17633319)
chr4 (33-111)||(17633468-17633545)
chr4 (35-120)||(9808970-9809054)
chr4 (40-121)||(9810655-9810735)
chr4 (33-106)||(55666951-55667023)
chr4 (72-111)||(15523146-15523185)
chr4 (34-106)||(19746950-19747021)
chr4 (34-106)||(19792785-19792856)
[»] chr2 (9 HSPs)
chr2 (40-110)||(1400675-1400744)
chr2 (63-111)||(30905951-30905999)
chr2 (33-111)||(28527224-28527300)
chr2 (33-111)||(34175049-34175126)
chr2 (41-102)||(45305881-45305941)
chr2 (35-107)||(30906180-30906251)
chr2 (40-108)||(33667454-33667521)
chr2 (41-111)||(34175248-34175317)
chr2 (33-103)||(41212438-41212507)
[»] chr8 (5 HSPs)
chr8 (41-111)||(5573920-5573989)
chr8 (33-120)||(1251603-1251689)
chr8 (40-111)||(28700045-28700115)
chr8 (40-111)||(38606728-38606798)
chr8 (33-126)||(24576187-24576279)
[»] chr3 (14 HSPs)
chr3 (40-106)||(18733613-18733678)
chr3 (33-111)||(27040714-27040791)
chr3 (40-121)||(9710852-9710932)
chr3 (33-111)||(11501402-11501479)
chr3 (33-111)||(19280329-19280406)
chr3 (41-110)||(42637860-42637926)
chr3 (33-106)||(3823561-3823633)
chr3 (33-98)||(44080174-44080238)
chr3 (33-120)||(3785858-3785944)
chr3 (33-96)||(39126297-39126359)
chr3 (41-111)||(11510076-11510144)
chr3 (33-102)||(1705795-1705863)
chr3 (62-111)||(27364907-27364956)
chr3 (63-111)||(27335294-27335342)
[»] chr1 (10 HSPs)
chr1 (33-111)||(34490320-34490397)
chr1 (40-130)||(28499665-28499753)
chr1 (53-111)||(34941705-34941762)
chr1 (40-120)||(5855243-5855322)
chr1 (33-111)||(5855012-5855088)
chr1 (33-111)||(9929904-9929982)
chr1 (40-111)||(42604114-42604184)
chr1 (40-110)||(13350889-13350958)
chr1 (33-107)||(34490098-34490171)
chr1 (42-80)||(34941992-34942030)
[»] scaffold1126 (2 HSPs)
scaffold1126 (40-108)||(111-179)
scaffold1126 (33-107)||(336-409)
[»] scaffold0251 (2 HSPs)
scaffold0251 (40-111)||(10749-10819)
scaffold0251 (70-111)||(10581-10622)
[»] scaffold0126 (1 HSPs)
scaffold0126 (33-109)||(21420-21495)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 33 - 222
Target Start/End: Complemental strand, 2430585 - 2430396
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactcttaataaaaataga 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2430585 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactcttaacaaaaataga 2430486  T
Q  133 agtatcaaatttaaaggctctttaatacagacccgttctaacgacaaacccttcannnnnnngggtaaattttaataaaagagagtaatt 222  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||||||||||       ||||||||||||||||||||||||||||    
T  2430485 agtatcaaatttaaaggctctttaatatggacccggtctaacgacaaacccttcagttttttgggtaaattttaataaaagagagtaatt 2430396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 24386343 - 24386429
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactctt 120  Q
    |||||| ||||||||| ||||||| |||||||| |||  ||||| ||||| |||||||||||||||||||| ||||||| ||||||||    
T  24386343 cacagaccatatatttggttaacttaaattttt-cagcgtggtataaagggatgtacacattaagggtgtcaacctatctttactctt 24386429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 9474614 - 9474534
Alignment:
Q  36 agatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttac 116  Q
    |||||||||| |||| ||||||||||||||  ||| ||||||||| | ||||| |||||||| ||||||||||||| ||||    
T  9474614 agatcatatagttagctaactgaaatttttcaagagtggtacaaaaggatgtatacattaagagtgtctacctatcattac 9474534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 20084651 - 20084581
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||| ||||||| |||||||| ||| |||||| ||||| |||||||||||||||||||| |||||||    
T  20084651 catatatttggttaacttaaattttt-cagcatggtataaagggatgtacacattaagggtgtcaacctatc 20084581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 11108147 - 11108072
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctaccta 109  Q
    |||||| ||||||||| ||||| |||||||||| |||| | ||||||  |||||||||||||||| |||||||||||    
T  11108147 cacagaccatatatttggttaattgaaattttt-cagagtagtacaagtgaatgtacacattaagagtgtctaccta 11108072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 7915662 - 7915606
Alignment:
Q  51 ttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacc 107  Q
    |||||||||||||||||||| || |||||| |  |||||||||||| ||||||||||    
T  7915662 ttaactgaaattttttcagagtgatacaaaagggtgtacacattaaaggtgtctacc 7915606  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 2835094 - 2835180
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactctt 120  Q
    |||||||  ||||||| ||||||| |||||||| |||| |||||||||   || |||||||||||| |||||||||||| || |||||    
T  2835094 cacagatggtatatttggttaacttaaattttt-cagagtggtacaaattgatatacacattaaggctgtctacctatcattgctctt 2835180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 22608343 - 22608270
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacc 107  Q
    |||||| ||||||||| ||||||| ||||||||  ||| |||||||||||  |||||||||||||| | ||||||    
T  22608343 cacagaccatatatttggttaactaaaatttttg-agagtggtacaaaggggtgtacacattaaggatatctacc 22608270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 30056096 - 30056027
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctat 110  Q
    ||||||||| ||||||||||||||||| ||| | |||||||||   ||| ||||||| |||||||||||||    
T  30056096 catatatttggttaactgaaatttttt-agagttgtacaaaggggagtatacattaaaggtgtctacctat 30056027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 10304678 - 10304630
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaagg 82  Q
    |||||| ||||||||| ||||||||||||||||| ||| |||||||||||    
T  10304678 cacagaccatatatttggttaactgaaatttttt-agagtggtacaaagg 10304630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 7706813 - 7706773
Alignment:
Q  62 tttttcagaatggtacaaaggaatgtacacattaagggtgt 102  Q
    ||||||||||||||||||| | ||||||||||||| |||||    
T  7706813 tttttcagaatggtacaaaaggatgtacacattaaaggtgt 7706773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 15221696 - 15221773
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||| ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||||| ||||||    
T  15221696 cacagaccatatatttagttaactgaaatttt-tcagaatgatacaaaggagtgtacacattaaaggtgtctgcctatc 15221773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 43262827 - 43262904
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||| ||||||||| |||||||||||||||| || | | |||||||||  |||||||||||||||||||||| ||||    
T  43262827 cacagaccatatatttggttaactgaaattttt-caaagtagtacaaaggggtgtacacattaagggtgtctacttatc 43262904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 19621606 - 19621656
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacac 91  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| |||||||    
T  19621606 catatatttggttaactgaaatttt-tcagaatggtacaaaggagtgtacac 19621656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 33958950 - 33958881
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||| ||||| |||||||||| |||| |||||||||||| | |||| ||||||||||||||||||||    
T  33958950 catatatttggttaagtgaaattttt-cagagtggtacaaagga-tatacatattaagggtgtctacctatc 33958881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 35922683 - 35922617
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacc 107  Q
    |||||||||  ||||||||||||||| |||| || |||||||| |||||||||||||| |||||||||    
T  35922683 catatatttgattaactgaaattttt-cagagtgatacaaagggatgtacacattaagtgtgtctacc 35922617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 622614 - 622667
Alignment:
Q  58 aaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||| ||||||||| ||||||| ||||||||||||| |||| |||||||    
T  622614 aaatttttttagaatggtaaaaaggaacgtacacattaaggatgtcaacctatc 622667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 33959114 - 33959178
Alignment:
Q  41 atatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctac 106  Q
    |||||||| |||||||||| ||||   ||||||||| |||||||| ||||||||||||||||||||    
T  33959114 atatattttgttaactgaagttttcg-agaatggtataaaggaatatacacattaagggtgtctac 33959178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 36169376 - 36169306
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||| ||||||| |||||||| || | ||||||||||  | |||||||||||| |||||||||||||    
T  36169376 catatatttggttaactaaaattttt-caaagtggtacaaagagaagtacacattaagagtgtctacctatc 36169306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 42034895 - 42034965
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||||||  | |||||||||||||| ||| ||||||||||| |||||| |||||| | ||||||||||||    
T  42034895 catatatttgatcaactgaaatttttt-agagtggtacaaagggatgtacgcattaaagatgtctacctatc 42034965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 13312730 - 13312799
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacc 107  Q
    |||| ||||||||| | |||||||||||||||| |||| ||||||||| |    |||||||||||||||||||||    
T  13312730 cacaaatcatatatatggttaactgaaattttt-cagagtggtacaaaag----tacacattaagggtgtctacc 13312799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 21548584 - 21548669
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactctt 120  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| ||||||| |||| || |||||    
T  21548584 cacagaccatatatttagttaactgaaatttttt-agaatggtac-aaggaatatacacattaaggatgtctacttatcattgctctt 21548669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 28804957 - 28804887
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||| ||||||||||||||| | ||||||||||||| |  |||||| ||||||||||||||||||||    
T  28804957 catatatttggttaactgaaattttct-agaatggtacaaaagggtgtacatattaagggtgtctacctatc 28804887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 22033192 - 22033254
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaag 97  Q
    |||||| ||||||||| ||||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  22033192 cacagaccatatatttggttaactaaaatttt-tcagaatggtacaaagg-atgtacacattaag 22033254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 26240202 - 26240257
Alignment:
Q  42 tatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagg 98  Q
    ||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||    
T  26240202 tatatttagttaacttaaatttttt-agaatggtacaaaggagtatacacattaagg 26240257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 21589755 - 21589823
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgt 102  Q
    |||||| ||||||||| | ||||||||||||||| ||| ||||| ||| | |||||||||||||||||||    
T  21589755 cacagaccatatatttggataactgaaatttttt-agagtggtataaacggatgtacacattaagggtgt 21589823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 31303433 - 31303362
Alignment:
Q  35 cagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacc 107  Q
    |||| ||| ||||| ||| |||||||||||| |||| || |||||| | ||||||||||||||||||||||||    
T  31303433 cagaccatgtatttggttgactgaaattttt-cagagtgatacaaatggatgtacacattaagggtgtctacc 31303362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 18312965 - 18313035
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||| |||| ||||||||||| |||| |||||||||||| ||| ||||||||| |||| ||| ||||    
T  18312965 catatatttggttagctgaaattttt-cagagtggtacaaaggagtgtgcacattaagagtgtttacgtatc 18313035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 28805157 - 28805223
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacc 107  Q
    ||||||||| ||||||| |||||||| |||| || ||||||||  | |||||||||||||||||||||    
T  28805157 catatatttggttaacttaaattttt-cagagtgatacaaaggggtatacacattaagggtgtctacc 28805223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 32964728 - 32964662
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacc 107  Q
    ||||||||||||||||| ||||| ||| ||| ||||  ||| ||||||||||||||||| ||||||||    
T  32964728 catatatttagttaacttaaattcttt-agagtggtgtaaatgaatgtacacattaaggatgtctacc 32964662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 20556909 - 20556989
Alignment:
Q  41 atatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactcttaa 122  Q
    ||||||||||||||||||||  |||||| | || ||||||||| ||| || ||||||| | |||||||||| || |||||||    
T  20556909 atatatttagttaactgaaa-attttcaaagtgatacaaaggagtgtgcatattaaggatatctacctatcattgctcttaa 20556989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 1966811 - 1966719
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactcttaataaaa 127  Q
    |||||| ||||||||| |||||||||||||||  |||| ||||||||| |  |||| ||| |||||||||||||||||| || ||||||||||||    
T  1966811 cacagaccatatatttggttaactgaaatttt--cagagtggtacaaaagggtgtatacagtaagggtgtctacctatcattgctcttaataaaa 1966719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 14351201 - 14351277
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttact 117  Q
    ||||||||| ||||||| ||||||||| ||| |||||||||| | || |||||||||||||||||||||||| |||||    
T  14351201 catatatttggttaact-aaattttttgagagtggtacaaagaagtgcacacattaagggtgtctacctatcattact 14351277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 16583571 - 16583505
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacc 107  Q
    ||||||||| |||||||||||||||   ||| ||||||||||| |||||| |||||||||||||||||    
T  16583571 catatatttggttaactgaaattttcg-agagtggtacaaagggatgtacgcattaagggtgtctacc 16583505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 19596922 - 19596992
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||| |||||||||||||||  || || |||||||| | |||||||||||||||| |||||||||||    
T  19596922 catatatttggttaactgaaattttc-caaaagggtacaaaaggatgtacacattaagggcgtctacctatc 19596992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 17633319 - 17633242
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||| ||||||||| ||||||| |||||||| | || ||||||||| || |||||||||||| |||||| |||||||    
T  17633319 cacagaccatatatttggttaactaaaattttt-cggagtggtacaaatgagtgtacacattaaaggtgtcaacctatc 17633242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 17633468 - 17633545
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||| ||||||||| ||||||||||| ||||||| | |||||||||||  |||||| ||||||||| || |||||||    
T  17633468 cacagaccatatatttggttaactgaaa-tttttcaaagtggtacaaaggggtgtacatattaagggtatcaacctatc 17633545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 9809054 - 9808970
Alignment:
Q  35 cagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactctt 120  Q
    |||| |||||||||||||||||| |||||||||| |  |||||||| |  |||||| |||||||||||| ||||||| ||| ||||    
T  9809054 cagaccatatatttagttaactg-aattttttcatagcggtacaaaagggtgtacatattaagggtgtcaacctatctttattctt 9808970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 9810735 - 9810655
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactctta 121  Q
    |||||||||| ||||||||||||||| || | ||||||||| |  |||||| |||||||||||| ||||||| ||| |||||    
T  9810735 catatatttaattaactgaaattttt-catagtggtacaaaagggtgtacatattaagggtgtcaacctatctttattctta 9810655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 55666951 - 55667023
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctac 106  Q
    |||||| |||||||||||||||||||||||||   | | |||||||||||| |||||| |||||||||| ||||    
T  55666951 cacagaccatatatttagttaactgaaattttcgaa-agtggtacaaaggagtgtacatattaagggtggctac 55667023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 15523185 - 15523146
Alignment:
Q  72 tggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  15523185 tggtacaaaggagtgtacacattaaaggtgtctacctatc 15523146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 19746950 - 19747021
Alignment:
Q  34 acagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctac 106  Q
    ||||| ||| ||||||||||||||||| ||||  |||||| ||||||||  ||||||||||||  ||||||||    
T  19746950 acagaccatgtatttagttaactgaaa-ttttcgagaatgatacaaaggggtgtacacattaaaagtgtctac 19747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 19792856 - 19792785
Alignment:
Q  34 acagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctac 106  Q
    ||||| ||| ||||||||||||||||| ||||  |||||| ||||||||  ||||||||||||  ||||||||    
T  19792856 acagaccatgtatttagttaactgaaa-ttttcgagaatgatacaaaggggtgtacacattaaaagtgtctac 19792785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 1400744 - 1400675
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctat 110  Q
    ||||||||| |||||||||||||||| |||| ||||||||| |  ||||||||||||||||||||||||||    
T  1400744 catatatttggttaactgaaattttt-cagattggtacaaaagggtgtacacattaagggtgtctacctat 1400675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 30905999 - 30905951
Alignment:
Q  63 ttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  30905999 ttttcagaatgttacaaagggatgtacacattaagagtgtctacctatc 30905951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 28527300 - 28527224
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||| ||||||||| |||| ||||||| |||||| | |||||||||||  |||||| ||||||||||||||||||||    
T  28527300 cacagaccatatatttggttagctgaaat-ttttcaaagtggtacaaaggggtgtaca-attaagggtgtctacctatc 28527224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 34175126 - 34175049
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||| ||||||||||||||||| ||||| |||| ||||||  |||||||| |||||||||||||  ||||| |||||||    
T  34175126 cacaaatcatatatttagttaattgaaaatttt-cagaataatacaaagggatgtacacattaaaagtgtcaacctatc 34175049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 45305941 - 45305881
Alignment:
Q  41 atatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgt 102  Q
    ||||||||  |||||||||||||||| ||| |||||||||||| |||||| |||||||||||    
T  45305941 atatatttgattaactgaaatttttt-agagtggtacaaaggagtgtacatattaagggtgt 45305881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 30906180 - 30906251
Alignment:
Q  35 cagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacc 107  Q
    |||| ||||||||| ||||||||||| ||||||||| ||||||||| |  |||||||||||| ||||| ||||    
T  30906180 cagaccatatatttggttaactgaaa-tttttcagagtggtacaaaagggtgtacacattaaaggtgtgtacc 30906251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 33667454 - 33667521
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacct 108  Q
    ||||||||| ||||||| |||||||| |||| ||||||||| || |||||| |||||||||||| ||||    
T  33667454 catatatttggttaactaaaattttt-cagagtggtacaaaagagtgtacatattaagggtgtcaacct 33667521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 34175248 - 34175317
Alignment:
Q  41 atatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||  |||||| ||||||||| ||||||||||||| |  |||||||||||| |||||| |||||||    
T  34175248 atatatttgattaacttaaatttttt-agaatggtacaaatgggtgtacacattaatggtgtcaacctatc 34175317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 41212438 - 41212507
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtc 103  Q
    |||||| ||||||||| ||||||| |||||||| |||| |||||||||||  | |||| ||||||||||||    
T  41212438 cacagaccatatatttggttaacttaaattttt-cagagtggtacaaaggggtatacatattaagggtgtc 41212507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 5573920 - 5573989
Alignment:
Q  41 atatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||||||||||||||| |||| ||| ||||||||| || |||||||||||| || |||||||||||    
T  5573920 atatatttagttaactgaaatctttt-agagtggtacaaaagagtgtacacattaaaggagtctacctatc 5573989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 1251603 - 1251689
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactctt 120  Q
    |||| ||||||||||||||||||||||| ||||  ||| ||||||||| |  |||||||||||||| |||||||| ||| ||| ||||    
T  1251603 cacaaatcatatatttagttaactgaaa-ttttcgagagtggtacaaatgggtgtacacattaaggatgtctaccaatctttattctt 1251689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 28700115 - 28700045
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||||||||||||||||||||| |||||| ||||||   ||||||||||||| | |||| |||||||    
T  28700115 catatatttagttaactgaaatttttt-agaatgatacaaaatgatgtacacattaaagatgtcaacctatc 28700045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 38606798 - 38606728
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||||||||||||||||||| |||||||| |||||||||||  | || | ||||||| ||||||||||||    
T  38606798 catatatttagttaactgaaat-ttttcagagtggtacaaaggggtctaaagattaaggatgtctacctatc 38606728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 24576187 - 24576279
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactcttaataaa 126  Q
    |||||| ||||||||| ||||| |||||||||   ||| |||||||||||  ||||||||||| ||||||||||| ||| ||| | ||||||||    
T  24576187 cacagaccatatatttggttaattgaaattttcg-agagtggtacaaaggggtgtacacattacgggtgtctaccaatctttatttttaataaa 24576279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 18733613 - 18733678
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctac 106  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||  |||||||||||| |||||||||    
T  18733613 catatatttagttaacttaaatttt-tcagaatggtataaaggggtgtacacattaaaggtgtctac 18733678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 27040714 - 27040791
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||||||||||||| |||||| |||||||| | ||| | ||||||||||||||||||||| || ||||| |||||||    
T  27040714 cacagatcatatatttggttaaccgaaattttct-agagtagtacaaaggaatgtacacattgagagtgtcaacctatc 27040791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 9710852 - 9710932
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactctta 121  Q
    ||||||||| |||||||||||||||| |||| |||||||||||  |||||| ||||||||| |||||| ||| ||| |||||    
T  9710852 catatatttggttaactgaaattttt-cagagtggtacaaaggggtgtacatattaagggtttctaccaatctttattctta 9710932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 11501402 - 11501479
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||||||||||||| ||||||| ||||||| | | | ||||| |||||| ||||||||||||| ||||| |||||||    
T  11501402 cacagatcatatatttggttaacttaaattttct-aaagtggtataaaggagtgtacacattaagtgtgtcaacctatc 11501479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 19280329 - 19280406
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||| |||||||||  |||||| ||| |||| |||| ||||||||| |  |||||||||||||||||||||||||||    
T  19280329 cacagaccatatatttgattaactaaaaatttt-cagagtggtacaaacgggtgtacacattaagggtgtctacctatc 19280406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 42637926 - 42637860
Alignment:
Q  41 atatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctat 110  Q
    |||||||| ||||| |||||||||| |||  ||||||||||| |||| ||||||||||||||||||||||    
T  42637926 atatatttggttaattgaaattttt-cag--tggtacaaagggatgtgcacattaagggtgtctacctat 42637860  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 3823633 - 3823561
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctac 106  Q
    |||||| |||||| || |||||||||||||||   ||| |||||||||||  ||||||||||||||||||||||    
T  3823633 cacagaccatataattggttaactgaaattttcg-agagtggtacaaaggggtgtacacattaagggtgtctac 3823561  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 44080238 - 44080174
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagg 98  Q
    ||||||| |||||||| ||||||||||||| || |||| ||||||||||  |||||||||||||||    
T  44080238 cacagattatatatttggttaactgaaattgtt-cagagtggtacaaagatatgtacacattaagg 44080174  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 3785944 - 3785858
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactctt 120  Q
    |||||| |||| | || |||||||||||||||   ||| |||||||||||  ||||||||||||||||||||||| ||| ||| ||||    
T  3785944 cacagaccataaaattggttaactgaaattttcg-agagtggtacaaaggggtgtacacattaagggtgtctaccaatctttattctt 3785858  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 39126297 - 39126359
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaa 96  Q
    |||||||||||||||| ||||||| ||| |||||||||||  ||||||| | ||||||||||||    
T  39126297 cacagatcatatatttggttaacttaaa-tttttcagaataatacaaagaagtgtacacattaa 39126359  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 11510076 - 11510144
Alignment:
Q  41 atatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||| |||||||||| |||||||||   ||||||||| || |||||||||||| ||||||||||||    
T  11510076 atatatttatttaactgaaa-tttttcagaggtgtacaaagg-atatacacattaaggatgtctacctatc 11510144  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 1705795 - 1705863
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgt 102  Q
    |||| ||||| ||||| ||||||||||||||||| | |||| |||| | | |||||||||||||||||||    
T  1705795 cacatatcatgtatttggttaactgaaatttttt-acaatgatacacaaggatgtacacattaagggtgt 1705863  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 27364956 - 27364907
Alignment:
Q  62 tttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||||||||| |||||  ||||||||||||  |||||||||||||    
T  27364956 tttttcagaatggtataaaggggtgtacacattaaatgtgtctacctatc 27364907  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 27335342 - 27335294
Alignment:
Q  63 ttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||||||||||||||  |||||||||||| | ||| ||||||||    
T  27335342 ttttcagaatggtacaaaggggtgtacacattaaagatgtttacctatc 27335294  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 34490320 - 34490397
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||| ||||||||| || ||||||||||||| |||| ||||||||||   ||||||||||||| |||||||||||||    
T  34490320 cacagaccatatattttgtaaactgaaattttt-cagagtggtacaaagtggtgtacacattaagagtgtctacctatc 34490397  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 28499665 - 28499753
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactcttaataaaaata 130  Q
    ||||||||| ||||||||||||||||| |||||||||||||   |||||||| ||||  ||||||  ||||| |||||||||| |||||||    
T  28499665 catatatttggttaactgaaatttttt-agaatggtacaaaatgatgtacacgttaa-agtgtctgtctatcattactcttaaaaaaaata 28499753  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 34941762 - 34941705
Alignment:
Q  53 aactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||||| ||||| ||||||    
T  34941762 aactgaaattttt-cagagtggtacaaagggatgtacacattaaggatgtcttcctatc 34941705  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 5855243 - 5855322
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatcgttactctt 120  Q
    ||||||||| ||||||| |||||||| |||| ||||||||| || |||||| ||||  |||||||||||||| || |||||    
T  5855243 catatatttggttaacttaaattttt-cagagtggtacaaaagagtgtacatattagtggtgtctacctatcattgctctt 5855322  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 5855088 - 5855012
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||| ||||||||| |||| |||||||||||  || |  ||||||||| ||||| |||||||| |||||||||||||    
T  5855088 cacagaccatatatttggttagctgaaatttttcaagta--gtacaaagggatgtaaacattaagcgtgtctacctatc 5855012  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 9929904 - 9929982
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtac-aaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||| ||||||||||||||| ||||| ||||||| |||||||| |||  ||||| ||||||||| ||||| |||||||    
T  9929904 cacagaccatatatttagttaattgaaa-tttttcaaaatggtacaaaaaaaatgtgcacattaagagtgtcaacctatc 9929982  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 42604184 - 42604114
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||| |||| ||||| ||||||||||| | ||||||||||| |  |||||||||||||| ||||||||||||    
T  42604184 catacatttggttaattgaaattttttaa-aatggtacaaatgggtgtacacattaaggttgtctacctatc 42604114  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 13350958 - 13350889
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctat 110  Q
    ||||||||| |||||||||||||||   ||| ||||||||| |  |||||||||||||| |||||||||||    
T  13350958 catatatttggttaactgaaattttcg-agagtggtacaaaagggtgtacacattaaggatgtctacctat 13350889  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 34490171 - 34490098
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacc 107  Q
    |||||| |||||||||||||||||||||||||  || | |||||| ||   || |||||||||||||||||||||    
T  34490171 cacagaccatatatttagttaactgaaatttta-catagtggtaccaaaagatatacacattaagggtgtctacc 34490098  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 34941992 - 34942030
Alignment:
Q  42 tatatttagttaactgaaattttttcagaatggtacaaa 80  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  34941992 tatatttagttaactgaatttttttcagagtggtacaaa 34942030  T

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Target: scaffold1126 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 179 - 111
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacct 108  Q
    ||||||||| ||||||||||||||||  ||| |||||||||  |||||||||||||| | |||||||||    
T  179 catatatttggttaactgaaatttttcaagagtggtacaaaaaaatgtacacattaaagatgtctacct 111  T

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Target: scaffold1126; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 336 - 409
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacc 107  Q
    |||||| ||||||||| ||||||||||| |||| |||| ||||||||||  ||||||| ||||||||||| ||||    
T  336 cacagaccatatatttggttaactgaaaatttt-cagagtggtacaaagagatgtacaaattaagggtgtttacc 409  T

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Target: scaffold0251 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 10749 - 10819
Alignment:
Q  40 catatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    ||||||||| ||||| ||||||||| | ||| ||||||||||||||||||| ||||||| ||| ||||||||    
T  10749 catatatttggttaattgaaattttct-agagtggtacaaaggaatgtacatattaaggatgtttacctatc 10819  T

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Target: scaffold0251; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 10622 - 10581
Alignment:
Q  70 aatggtacaaaggaatgtacacattaagggtgtctacctatc 111  Q
    |||||||||||||| |||||||||||| ||||||||| ||||    
T  10622 aatggtacaaaggagtgtacacattaaaggtgtctacttatc 10581  T

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Target: scaffold0126 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 21495 - 21420
Alignment:
Q  33 cacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctaccta 109  Q
    |||||| | ||||||| ||||||||||||||||| | ||||||| ||| | |||||||||||||  |||||||||||    
T  21495 cacagaccgtatatttggttaactgaaatttttt-aaaatggtataaatggatgtacacattaaaagtgtctaccta 21420  T

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