View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0930_low_28 (Length: 259)
Name: NF0930_low_28
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0930_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 3741710 - 3741473
Alignment:
| Q |
21 |
gtaaatggtaatttgagtgactttacatcggtgtgtgttt--aggttttcataaatcttttggttctaaaaagaatacgactttaaggaaaacattttta |
118 |
Q |
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| T |
3741710 |
gtaaatggtaatttgagtgactttacatcggtgtgtgtttttaggttttcataaatcttttggttctaaaaagaatacgactttaaggaaaacattttta |
3741611 |
T |
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| Q |
119 |
tagatattcaattttcataaatctttcggttccaaaaagattacgattttgatgtatacatctgaagg-----ctattacatgagaataagaaaattccc |
213 |
Q |
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| T |
3741610 |
tagatattcaattttcataaatctttcggttccaaaaagattacgattttgatgtatacatctgaaggtcggtttattacatgagaataagaaaactccc |
3741511 |
T |
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| Q |
214 |
tttaacaactttaaaataagatatgaactagtataatc |
251 |
Q |
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| T |
3741510 |
tttaacaactttaaaataagatatgaactagaataatc |
3741473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 10347807 - 10347743
Alignment:
| Q |
188 |
tattacatgagaataagaaaattccctttaacaac-tttaaaataagatatgaactagtataatc |
251 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
10347807 |
tattacatgagaataagaaaattccctttaacaacttttaaaataagatatgaactagaataatc |
10347743 |
T |
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