View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0930_low_3 (Length: 529)
Name: NF0930_low_3
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0930_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Original strand, 10970301 - 10970757
Alignment:
| Q |
14 |
agacaaaagatgaacaacttactcgattaaaatacaggaacaacatcttttcctcatctccagcgcttcttctgaaaatttattagaaaatggtttataa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970301 |
agacaaaagatgaacaacttactcgattaaaatacaggaacaacatcttttcctcatctccagcgcttcttctgaaaatttattagaaaatggtttataa |
10970400 |
T |
|
| Q |
114 |
acaagtgaagcagcatatgtatttgttcatataaatttccatttcagtactaaagatgtttcaagtattcaattacattagcgattctagattctacaca |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970401 |
acaagtgaagcagcataggtatttgttcatataaatttccatttcagtactaaagatgtttcaagtattcaattacattagcgattctagattctacaca |
10970500 |
T |
|
| Q |
214 |
gtcaggaaaagcatgcagtt--gagatcccaactgttaattgaagatcagatgacttgtattacgagatgtatattttaaagtggatttggtaaaatcat |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970501 |
gtcaggaaaagcatgcagtcaagagatcccaactgttaattgaagatcagatgacttgtattacgagatgtatattttaaagtggatttggtaaaatcat |
10970600 |
T |
|
| Q |
312 |
aatacaagtctaatcttcatcttatagtcgagatccatgaccacatcactgcacaaaatccaaacccttaacaaataaggcttcaatgaaattcaatgca |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970601 |
aatacaagtctaatcttcatcttatagtcgagatccatgaccacatcactgcacaaaatccaaacccttaacaaataaggcttcaatgaaattcaatgca |
10970700 |
T |
|
| Q |
412 |
tagattaacatgatctcatgaaatctaattgagcaatcaattttcattagaatttag |
468 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10970701 |
ttgattaacatgatctcatgaaatctaattgagcaatcaatttccattagaatttag |
10970757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University