View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0930_low_30 (Length: 256)
Name: NF0930_low_30
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0930_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 203
Target Start/End: Original strand, 44285691 - 44285890
Alignment:
| Q |
3 |
gcatttcttgctagttcttctcccagtctcggactcagccttttagccgattcgcacctttactctctgtctcaatcgagccggtcagatcaatagagaa |
102 |
Q |
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| T |
44285691 |
gcatttcttgctagttcttctcccaatctcggactcgaccttttagccgattcgcacctttactctctgtctcaatcaattcggtcagatcaatagagaa |
44285790 |
T |
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| Q |
103 |
gtcaggcactcgatagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagtgctaaagcttc |
202 |
Q |
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| T |
44285791 |
gtcaggcactcgattgacttaaaggaagattccg-ccgtaaattgattgatcaatgttaccgggaagcagcaacagagatggattgagtactaaagcttc |
44285889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 44070322 - 44070126
Alignment:
| Q |
3 |
gcatttcttgctagttcttctcccagtctcggactcagccttttagccgattcgcacctttactctctgtctcaatcgagccggtcagatcaatagagaa |
102 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44070322 |
gcatttcttgctagttcttctcccaatctcggactcagccgtttagccggtttgcacctttactctctgtctcaatctagccggtcagatcaatagagaa |
44070223 |
T |
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| Q |
103 |
gtcaggcactcgatagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagtgctaaagct |
200 |
Q |
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|||||||||| ||| ||||||||||||||||||| |||| |||| ||||| ||||| || ||||||||||||||||||||||||||| |||||||| |
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| T |
44070222 |
gtcaggcacttgattgacttaaaggaaggttccg-ccgttaattgattgattgatgttgccaggaagcagcaacagagacagattgagtactaaagct |
44070126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 16443843 - 16443749
Alignment:
| Q |
105 |
caggcactcgatagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagtgctaaagct |
200 |
Q |
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|||||||| ||| ||||||||||||||||||||| || |||| ||||| ||||| || ||||||||||||||||||||||||||| |||||||| |
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| T |
16443843 |
caggcacttgattgacttaaaggaaggttccgcc-gttaattgattgattgatgttgccaggaagcagcaacagagacagattgagtactaaagct |
16443749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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