View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0930_low_34 (Length: 251)

Name: NF0930_low_34
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0930_low_34
NF0930_low_34
[»] chr4 (17 HSPs)
chr4 (42-223)||(48142085-48142266)
chr4 (42-122)||(6541987-6542067)
chr4 (42-125)||(48893440-48893523)
chr4 (43-81)||(45687028-45687066)
chr4 (42-122)||(9927258-9927339)
chr4 (42-81)||(5872105-5872144)
chr4 (50-124)||(26175434-26175509)
chr4 (42-81)||(29999670-29999709)
chr4 (42-81)||(46147237-46147276)
chr4 (42-81)||(48143336-48143375)
chr4 (42-81)||(54199749-54199788)
chr4 (42-81)||(56178477-56178516)
chr4 (43-96)||(4588240-4588293)
chr4 (48-81)||(34570255-34570288)
chr4 (42-122)||(52082463-52082543)
chr4 (49-81)||(13992132-13992164)
chr4 (68-124)||(34670928-34670983)
[»] chr3 (21 HSPs)
chr3 (48-122)||(2074883-2074956)
chr3 (42-96)||(32891378-32891432)
chr3 (42-81)||(37408747-37408786)
chr3 (42-124)||(27305517-27305597)
chr3 (42-122)||(22834807-22834887)
chr3 (42-81)||(7762554-7762593)
chr3 (42-81)||(9635965-9636004)
chr3 (42-81)||(19683729-19683768)
chr3 (42-81)||(31314728-31314767)
chr3 (42-81)||(40734785-40734824)
chr3 (42-81)||(40735670-40735709)
chr3 (43-81)||(29196231-29196269)
chr3 (42-122)||(29682644-29682726)
chr3 (42-75)||(9634668-9634701)
chr3 (43-123)||(9666269-9666349)
chr3 (48-81)||(37406983-37407016)
chr3 (49-81)||(5257985-5258017)
chr3 (49-81)||(5260164-5260196)
chr3 (42-82)||(21350851-21350891)
chr3 (43-75)||(23197791-23197823)
chr3 (42-122)||(51351941-51352020)
[»] chr7 (14 HSPs)
chr7 (42-122)||(47675936-47676017)
chr7 (42-81)||(25616143-25616182)
chr7 (48-93)||(23344259-23344304)
chr7 (42-122)||(23555329-23555410)
chr7 (42-122)||(31105200-31105280)
chr7 (43-122)||(36146212-36146291)
chr7 (63-122)||(27984294-27984353)
chr7 (42-81)||(35854204-35854243)
chr7 (42-81)||(41317280-41317319)
chr7 (42-81)||(48489719-48489758)
chr7 (42-75)||(495835-495868)
chr7 (42-122)||(41648814-41648894)
chr7 (49-81)||(4179068-4179100)
chr7 (49-81)||(48409102-48409134)
[»] chr8 (16 HSPs)
chr8 (42-81)||(34256348-34256387)
chr8 (42-81)||(44304143-44304182)
chr8 (42-122)||(11711805-11711884)
chr8 (42-122)||(15213074-15213155)
chr8 (49-96)||(19945184-19945232)
chr8 (42-81)||(12702472-12702511)
chr8 (42-73)||(18105925-18105956)
chr8 (42-81)||(30143628-30143667)
chr8 (42-81)||(34254172-34254211)
chr8 (42-81)||(41366459-41366498)
chr8 (43-81)||(5689556-5689594)
chr8 (42-75)||(1345223-1345256)
chr8 (48-81)||(4734000-4734033)
chr8 (42-122)||(6599253-6599333)
chr8 (42-122)||(6674706-6674786)
chr8 (42-95)||(19491530-19491583)
[»] chr1 (14 HSPs)
chr1 (45-88)||(44646648-44646691)
chr1 (42-123)||(833969-834050)
chr1 (42-88)||(15820584-15820630)
chr1 (42-122)||(8550584-8550664)
chr1 (42-122)||(37559664-37559745)
chr1 (42-81)||(3157153-3157192)
chr1 (45-88)||(44650006-44650049)
chr1 (42-81)||(49918638-49918677)
chr1 (42-81)||(50167021-50167060)
chr1 (43-81)||(45644199-45644237)
chr1 (50-118)||(3189640-3189708)
chr1 (50-118)||(3198457-3198525)
chr1 (50-118)||(3207296-3207364)
chr1 (42-95)||(41361198-41361251)
[»] chr5 (12 HSPs)
chr5 (42-122)||(39468348-39468429)
chr5 (43-122)||(3075549-3075629)
chr5 (42-81)||(28750497-28750536)
chr5 (42-81)||(30682764-30682803)
chr5 (42-81)||(42428272-42428311)
chr5 (50-122)||(534054-534127)
chr5 (42-75)||(5887282-5887315)
chr5 (42-122)||(33831966-33832046)
chr5 (49-81)||(8565789-8565821)
chr5 (49-81)||(13343355-13343387)
chr5 (48-88)||(13695527-13695567)
chr5 (49-81)||(30182883-30182915)
[»] chr2 (14 HSPs)
chr2 (42-122)||(723547-723627)
chr2 (42-122)||(34139573-34139653)
chr2 (42-122)||(2838233-2838313)
chr2 (42-122)||(12123393-12123472)
chr2 (42-81)||(11067588-11067627)
chr2 (42-73)||(26353458-26353489)
chr2 (42-81)||(38312528-38312567)
chr2 (42-81)||(45100042-45100081)
chr2 (42-96)||(11049833-11049887)
chr2 (43-81)||(33162295-33162333)
chr2 (42-123)||(42362633-42362714)
chr2 (50-122)||(36987875-36987947)
chr2 (49-81)||(4484169-4484201)
chr2 (49-81)||(36205506-36205538)
[»] scaffold1668 (1 HSPs)
scaffold1668 (42-81)||(1343-1382)
[»] scaffold0002 (1 HSPs)
scaffold0002 (42-81)||(434822-434861)
[»] chr6 (4 HSPs)
chr6 (42-81)||(5408911-5408950)
chr6 (42-81)||(5413236-5413275)
chr6 (42-81)||(9182872-9182911)
chr6 (42-75)||(28137258-28137291)
[»] scaffold0076 (1 HSPs)
scaffold0076 (50-122)||(16195-16265)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 48142266 - 48142085
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttttattggtgcaatttatttgtccgaattcacaacacattggttgaaattcaaaa 141  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||  |||||||| ||| ||||||||| ||||||||||||||||||||    
T  48142266 actttaatattggttattactttcctttgctccacacatctaagttttattggtgtgatttatttatcctaattcacaatacattggttgaaattcaaaa 48142167  T
Q  142 gtgtcacactaaaatttgtcgatctcatgaatttcgtttctattaataaaagatggtatgttgaaaaatataccataaaaat 223  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  48142166 atgtcacgctaaaatttgtcgatctcatgaatttcgtttctattaataaaagatggtatgttgaaaaacattccataaaaat 48142085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 6542067 - 6541987
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttttattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||||| ||||||||||||||||| ||||| |||| |||||| ||  | || | |||||||||||||||||    
T  6542067 actttgatattggttattactttcctttgctccacacatcaaagtattattgatgtgagttttatgtccgaattcacaaca 6541987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 48893523 - 48893440
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaacacat 125  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||| ||||||||  |||| |  |||||||||||||||||||    
T  48893523 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattt-tgagtccgaattcacaacacat 48893440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 45687066 - 45687028
Alignment:
Q  43 ctttaatattggttactactttcctttgctccatacatc 81  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  45687066 ctttgatattggttactactttcctttgctccatacatc 45687028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 9927339 - 9927258
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||| ||||||||||||||||||| |||||  ||||| ||||||||| | || |  ||||||||||||||||    
T  9927339 actttgatattggtaactactttcctttgctccacacatcatagtttatattggtgcgagttttgagtccgaattcacaaca 9927258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 5872105 - 5872144
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  5872105 actttgatattggttactactttcctttgctccacacatc 5872144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 26175509 - 26175434
Alignment:
Q  50 attggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaacaca 124  Q
    |||||||||||||||||||||||||| |||||  ||||| ||||||||  | || |  ||||||||||||||||||    
T  26175509 attggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaca 26175434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 29999709 - 29999670
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  29999709 actttgatattggttactactttcctttgctccacacatc 29999670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 46147276 - 46147237
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  46147276 actttgatattggttactactttcctttgctccacacatc 46147237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 48143336 - 48143375
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  48143336 actttgatattggttactactttcctttgctccacacatc 48143375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 54199788 - 54199749
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  54199788 actttgatactggttactactttcctttgctccatacatc 54199749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 56178516 - 56178477
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  56178516 actttgatattggttactactttcctttgctccacacatc 56178477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 4588240 - 4588293
Alignment:
Q  43 ctttaatattggttactactttcctttgctccatacatctaagttttattggtg 96  Q
    |||| ||| ||||||||| |||||||||||||| ||||| |||| |||||||||    
T  4588240 ctttgatagtggttactattttcctttgctccacacatcaaagtattattggtg 4588293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 34570288 - 34570255
Alignment:
Q  48 atattggttactactttcctttgctccatacatc 81  Q
    |||||||||||||||||||||||||||| |||||    
T  34570288 atattggttactactttcctttgctccacacatc 34570255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 52082543 - 52082463
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc-taagttttattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| ||||||||||||||||||||||| |||| ||||| ||| || ||||||||  |||| |  ||||||||||||||||    
T  52082543 actttgatattggttactactttcctttgttccacacatcataatttgtattggtgtgattt-tgagtccgaattcacaaca 52082463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 13992164 - 13992132
Alignment:
Q  49 tattggttactactttcctttgctccatacatc 81  Q
    ||||||||||||||||||||||||||| |||||    
T  13992164 tattggttactactttcctttgctccacacatc 13992132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 34670928 - 34670983
Alignment:
Q  68 ttgctccatacatctaagttttattggtgcaatttatttgtccgaattcacaacaca 124  Q
    ||||||| ||||||||| |||||||||||  | |||||||| |||||||||||||||    
T  34670928 ttgctccgtacatctaaattttattggtgtga-ttatttgttcgaattcacaacaca 34670983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 2074956 - 2074883
Alignment:
Q  48 atattggttactactttcctttgctccatacatctaagttttattggtgcaatttatttgtccgaattcacaaca 122  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||||  |||| |  ||||||||||||||||    
T  2074956 atattggttactactttcctttgctccacacatcatagttttattggtgtgattt-tgggtccgaattcacaaca 2074883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 32891378 - 32891432
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttttattggtg 96  Q
    |||||||||||||||||||||||||||||||||| |||||  ||||| |||||||    
T  32891378 actttaatattggttactactttcctttgctccacacatcatagtttcattggtg 32891432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 37408747 - 37408786
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  37408747 actttaatattggttactactttcctttgctccacacatc 37408786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 27305597 - 27305517
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttttattggtgcaatttatttgtccgaattcacaacaca 124  Q
    ||||| |||||||||||||||||||||||||||| |||||  || ||||||||||  |||| |  ||||||||||||||||||    
T  27305597 actttgatattggttactactttcctttgctccacacatcatag-tttattggtgtgattt-tgagtccgaattcacaacaca 27305517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 22834887 - 22834807
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||| ||||||||  |||| |  ||||||||||||||||    
T  22834887 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattt-tgagtccgaattcacaaca 22834807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 7762554 - 7762593
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  7762554 actttgatattggttactactttcctttgctccacacatc 7762593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 9636004 - 9635965
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  9636004 actttgatattggttactactttcctttgctccacacatc 9635965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 19683768 - 19683729
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  19683768 actttgatattggttactactttcctttgctccaaacatc 19683729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 31314728 - 31314767
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  31314728 actttaatattagttattactttcctttgctccatacatc 31314767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 40734785 - 40734824
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  40734785 actttgatattggttactactttcctttgctccacacatc 40734824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 40735670 - 40735709
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  40735670 actttgatattggttactactttcctttgctccacacatc 40735709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 29196269 - 29196231
Alignment:
Q  43 ctttaatattggttactactttcctttgctccatacatc 81  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  29196269 ctttgatattggttactactttcctttgctccacacatc 29196231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 29682644 - 29682726
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatt-tgtccgaattcacaaca 122  Q
    |||||||| ||| ||||||||||||||||||||| |||||  ||||| ||||||||  |||| || |||| ||||||||||||    
T  29682644 actttaattttgattactactttcctttgctccacacatcatagtttgtattggtgtgattttttgtgtcggaattcacaaca 29682726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 9634701 - 9634668
Alignment:
Q  42 actttaatattggttactactttcctttgctcca 75  Q
    ||||| ||||||||||||||||||||||||||||    
T  9634701 actttgatattggttactactttcctttgctcca 9634668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 9666349 - 9666269
Alignment:
Q  43 ctttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaacac 123  Q
    |||| |||||||||||||||||||||||||||| | |||  ||||| ||||||||  |||| |  |||||||||||||||||    
T  9666349 ctttgatattggttactactttcctttgctccacagatcatagtttgtattggtgtgattt-tgagtccgaattcacaacac 9666269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 37406983 - 37407016
Alignment:
Q  48 atattggttactactttcctttgctccatacatc 81  Q
    |||||||||||||||||||||||||||| |||||    
T  37406983 atattggttactactttcctttgctccacacatc 37407016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 5258017 - 5257985
Alignment:
Q  49 tattggttactactttcctttgctccatacatc 81  Q
    ||||||||||||||||||||||||||| |||||    
T  5258017 tattggttactactttcctttgctccacacatc 5257985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 5260196 - 5260164
Alignment:
Q  49 tattggttactactttcctttgctccatacatc 81  Q
    ||||||||||||||||||||||||||| |||||    
T  5260196 tattggttactactttcctttgctccacacatc 5260164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 21350891 - 21350851
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatct 82  Q
    ||||| ||||||||||||||||||||||||| || ||||||    
T  21350891 actttgatattggttactactttcctttgcttcacacatct 21350851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 23197823 - 23197791
Alignment:
Q  43 ctttaatattggttactactttcctttgctcca 75  Q
    ||||| |||||||||||||||||||||||||||    
T  23197823 ctttattattggttactactttcctttgctcca 23197791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 51352020 - 51351941
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttttattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| ||||||||||| |||||||||||||||| |||||  ||| |||||| ||  |||| |  ||||||||||||||||    
T  51352020 actttgatattggttaccactttcctttgctccacacatcgtagtattattgatgtgattt-tgagtccgaattcacaaca 51351941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 47676017 - 47675936
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||| ||||||||  | || | |||||||||||||||||    
T  47676017 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgtgtccgaattcacaaca 47675936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 25616143 - 25616182
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  25616143 actttgatattggttactactttcctttgctccatacatc 25616182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 23344259 - 23344304
Alignment:
Q  48 atattggttactactttcctttgctccatacatctaagttttattg 93  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||    
T  23344259 atattggttactactttcctttgctccacacatcatagttttattg 23344304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 23555329 - 23555410
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||| ||||||||  | || |  ||||||||||||||||    
T  23555329 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 23555410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 31105280 - 31105200
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttttattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||| ||||||||||||||| ||||| |||||  |||||||||||||  | || | ||| |||||||||||||    
T  31105280 actttgatattgattactactttcctttactccacacatcatagttttattggtgtgagttttgtgttcgaattcacaaca 31105200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 36146291 - 36146212
Alignment:
Q  43 ctttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    |||| |||||||||||||||||||||||||||| |||||  ||||| |||| ||| ||||| |  ||||||||||||||||    
T  36146291 ctttgatattggttactactttcctttgctccacacatcatagtttgtatttgtgtaattt-tgagtccgaattcacaaca 36146212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 27984353 - 27984294
Alignment:
Q  63 ttcctttgctccatacatctaagttttattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||||||||||| |||| |||||||||||| ||  ||||||||||  ||||||||||||    
T  27984353 ttcctttgctccaaacatataagttttattgatgtgatttatttgtttgaattcacaaca 27984294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 35854204 - 35854243
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  35854204 actttgatattggttactactttcctttgctccacacatc 35854243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 41317319 - 41317280
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  41317319 actttgatattggttactactttcctttgctccaaacatc 41317280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 48489719 - 48489758
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  48489719 actttgatattggttactactttcctttgctccacacatc 48489758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 495868 - 495835
Alignment:
Q  42 actttaatattggttactactttcctttgctcca 75  Q
    ||||| ||||||||||||||||||||||||||||    
T  495868 actttgatattggttactactttcctttgctcca 495835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 41648894 - 41648814
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| ||||| |||||||||||||||||||||| |||||  ||||| ||||||||  |||| |  ||||||||||||||||    
T  41648894 actttgatattagttactactttcctttgctccacacatcatagtttgtattggtgtgattt-tgagtccgaattcacaaca 41648814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 4179068 - 4179100
Alignment:
Q  49 tattggttactactttcctttgctccatacatc 81  Q
    ||||||||||||||||||||||||||| |||||    
T  4179068 tattggttactactttcctttgctccacacatc 4179100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 48409102 - 48409134
Alignment:
Q  49 tattggttactactttcctttgctccatacatc 81  Q
    ||||||||||||||||||||||||||| |||||    
T  48409102 tattggttactactttcctttgctccacacatc 48409134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 34256387 - 34256348
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  34256387 actttaatattggttactactttcctttgctccacacatc 34256348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 44304143 - 44304182
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  44304143 actttaatattggttactactttcctttgctccacacatc 44304182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 11711884 - 11711805
Alignment:
Q  42 actttaatattggttactactttcc-tttgctccatacatctaagttttattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| || |||||||||||||||| ||||||||| ||||||||| |||||||||| ||||| |  ||||||||||||||||    
T  11711884 acttttatcttggttactactttccttttgctccacacatctaag-tttattggtgtaattt-tgagtccgaattcacaaca 11711805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 15213074 - 15213155
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||| ||||||||  | || |  ||||||||||||||||    
T  15213074 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 15213155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 19945232 - 19945184
Alignment:
Q  49 tattggttactactttcctttgctccatacatctaagttt-tattggtg 96  Q
    ||||||||||||||||||||||||||| ||||| |||||| ||||||||    
T  19945232 tattggttactactttcctttgctccacacatcaaagtttgtattggtg 19945184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 12702511 - 12702472
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  12702511 actttgatattggttactactttcctttgctccacacatc 12702472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 73
Target Start/End: Complemental strand, 18105956 - 18105925
Alignment:
Q  42 actttaatattggttactactttcctttgctc 73  Q
    ||||||||||||||||||||||||||||||||    
T  18105956 actttaatattggttactactttcctttgctc 18105925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 30143628 - 30143667
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  30143628 actttgatattggttactactttcctttgctccacacatc 30143667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 34254211 - 34254172
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  34254211 actttgatattggttactactttcctttgctccacacatc 34254172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 41366498 - 41366459
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  41366498 actttgatattggttactactttcctttgctccacacatc 41366459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 5689556 - 5689594
Alignment:
Q  43 ctttaatattggttactactttcctttgctccatacatc 81  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  5689556 ctttgatattggttactactttcctttgctccacacatc 5689594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 1345256 - 1345223
Alignment:
Q  42 actttaatattggttactactttcctttgctcca 75  Q
    ||||| ||||||||||||||||||||||||||||    
T  1345256 actttgatattggttactactttcctttgctcca 1345223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 4734000 - 4734033
Alignment:
Q  48 atattggttactactttcctttgctccatacatc 81  Q
    |||||||||||||||||||||||||||| |||||    
T  4734000 atattggttactactttcctttgctccacacatc 4734033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 6599253 - 6599333
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||||||||||||||||||||| | |||||  ||||| ||||||||  |||| |  ||||||||||||||||    
T  6599253 actttgatattggttactactttcctttgctctacacatcatagtttgtattggtgtgattt-tgagtccgaattcacaaca 6599333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 6674706 - 6674786
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||||||||||||||||||||| | |||||  ||||| ||||||||  |||| |  ||||||||||||||||    
T  6674706 actttgatattggttactactttcctttgctctacacatcatagtttgtattggtgtgattt-tgagtccgaattcacaaca 6674786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 19491583 - 19491530
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttttattggt 95  Q
    ||||| |||||| ||| ||||||||||||||||| |||||  ||||||||||||    
T  19491583 actttgatattgattaatactttcctttgctccacacatcatagttttattggt 19491530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 44646691 - 44646648
Alignment:
Q  45 ttaatattggttactactttcctttgctccatacatctaagttt 88  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  44646691 ttaatattggttactactttcctttgctacacacatctaagttt 44646648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 834050 - 833969
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaacac 123  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||| ||||||||  |||| |  |||||||||||||||||    
T  834050 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattt-tgagtccgaattcacaacac 833969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 15820584 - 15820630
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt 88  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||    
T  15820584 actttgatattagttactactttcctttgctccacacatctaagttt 15820630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 8550664 - 8550584
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||| ||||||||  |||| |  ||||||||||||||||    
T  8550664 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattt-tgagtccgaattcacaaca 8550584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 37559745 - 37559664
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||| ||||||||  | || |  ||||||||||||||||    
T  37559745 actttgatattggttactactttcctttgctccagacatcatagtttatattggtgtgagttttgagtccgaattcacaaca 37559664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 3157153 - 3157192
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  3157153 actttgatattggttactactttcctttgctccacacatc 3157192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 44650049 - 44650006
Alignment:
Q  45 ttaatattggttactactttcctttgctccatacatctaagttt 88  Q
    |||||||||||||||||||| ||||||| || ||||||||||||    
T  44650049 ttaatattggttactacttttctttgctacacacatctaagttt 44650006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 49918638 - 49918677
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  49918638 actttgatattggttactactttcctttgctccacacatc 49918677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 50167060 - 50167021
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  50167060 actttgatattggttactactttcctttgctccacacatc 50167021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 45644237 - 45644199
Alignment:
Q  43 ctttaatattggttactactttcctttgctccatacatc 81  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  45644237 ctttgatattggttactactttcctttgctccacacatc 45644199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 3189640 - 3189708
Alignment:
Q  50 attggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcac 118  Q
    |||||||||||||||||||||||||| |||||  ||||| ||||||||  |||| | |||||||||||||    
T  3189640 attggttactactttcctttgctccagacatcatagtttatattggtgtgattt-tgtgtccgaattcac 3189708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 3198457 - 3198525
Alignment:
Q  50 attggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcac 118  Q
    |||||||||||||||||||||||||| |||||  ||||| ||||||||  |||| | |||||||||||||    
T  3198457 attggttactactttcctttgctccagacatcatagtttatattggtgtgattt-tgtgtccgaattcac 3198525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 3207296 - 3207364
Alignment:
Q  50 attggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcac 118  Q
    |||||||||||||||||||||||||| |||||  ||||| ||||||||  |||| | |||||||||||||    
T  3207296 attggttactactttcctttgctccagacatcatagtttatattggtgtgattt-tgtgtccgaattcac 3207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 41361198 - 41361251
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttttattggt 95  Q
    ||||| |||||| ||| ||||||||||||||||| |||||  ||||||||||||    
T  41361198 actttgatattgattaatactttcctttgctccacacatcatagttttattggt 41361251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 39468429 - 39468348
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||| |||||||| || || |  || |||||||||||||    
T  39468429 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtaagttttgagttcgaattcacaaca 39468348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 3075629 - 3075549
Alignment:
Q  43 ctttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    |||| |||||||||| ||||||||||||||||| |||||  ||||| ||||||||  | || || ||||||||||||||||    
T  3075629 ctttgatattggttattactttcctttgctccacacatcatagtttgtattggtgtgagtttttagtccgaattcacaaca 3075549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 28750536 - 28750497
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  28750536 actttaaaattggttactactttcctttgctccacacatc 28750497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 30682803 - 30682764
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  30682803 actttgatattggttactactttcctttgctccacacatc 30682764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 42428311 - 42428272
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  42428311 actttgatattggttactactttcctttgctccacacatc 42428272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 534054 - 534127
Alignment:
Q  50 attggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    |||||||||||||||||||||||||| |||||  ||||| ||||||||  | || |  ||||||||||||||||    
T  534054 attggttactactttcctttgctccacacatcatagtttctattggtgtgagttttgagtccgaattcacaaca 534127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 5887315 - 5887282
Alignment:
Q  42 actttaatattggttactactttcctttgctcca 75  Q
    ||||| ||||||||||||||||||||||||||||    
T  5887315 actttgatattggttactactttcctttgctcca 5887282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 33831966 - 33832046
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| || ||||||||||||||||||||||||| |||||  ||||| |||| ||| ||||| |  ||||||||||||||||    
T  33831966 actttgattttggttactactttcctttgctccacacatcatagtttgtatttgtgtaattt-tgagtccgaattcacaaca 33832046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 8565821 - 8565789
Alignment:
Q  49 tattggttactactttcctttgctccatacatc 81  Q
    ||||||||||||||||||||||||||| |||||    
T  8565821 tattggttactactttcctttgctccacacatc 8565789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 13343355 - 13343387
Alignment:
Q  49 tattggttactactttcctttgctccatacatc 81  Q
    ||||||||||||||||||||||||||| |||||    
T  13343355 tattggttactactttcctttgctccacacatc 13343387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 13695567 - 13695527
Alignment:
Q  48 atattggttactactttcctttgctccatacatctaagttt 88  Q
    |||||||| ||| |||||||||||||||||||| |||||||    
T  13695567 atattggtaacttctttcctttgctccatacatataagttt 13695527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 30182883 - 30182915
Alignment:
Q  49 tattggttactactttcctttgctccatacatc 81  Q
    ||||||||||||||||||||||||||| |||||    
T  30182883 tattggttactactttcctttgctccacacatc 30182915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 723627 - 723547
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||| ||||||||  |||| |  ||||||||||||||||    
T  723627 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattt-tgagtccgaattcacaaca 723547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 34139653 - 34139573
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||| ||||||||  |||| |  ||||||||||||||||    
T  34139653 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattt-tgagtccgaattcacaaca 34139573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 2838233 - 2838313
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttttattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| ||| |||||||||||||||||| ||||| ||||| |||| |||||||||  | || | |||||||| ||||||||    
T  2838233 actttgatagtggttactactttcctttactccacacatcaaagtattattggtgtgagttttgtgtccgaactcacaaca 2838313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 12123472 - 12123393
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttttattggtgcaatttatttgtccgaattcacaaca 122  Q
    ||||| |||||||||||||||||||||||||||| |||| |||  ||||| |||| ||||| |  |||| |||||||||||    
T  12123472 actttgatattggttactactttcctttgctccacacatataa-atttataggtgtaatttttgagtccaaattcacaaca 12123393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 11067588 - 11067627
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  11067588 actttgatattggttactactttcctttgctccacacatc 11067627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 73
Target Start/End: Original strand, 26353458 - 26353489
Alignment:
Q  42 actttaatattggttactactttcctttgctc 73  Q
    ||||||||||||||||||||||||||||||||    
T  26353458 actttaatattggttactactttcctttgctc 26353489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 38312528 - 38312567
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  38312528 actttgatattggttactactttcctttgctccacacatc 38312567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 45100042 - 45100081
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  45100042 actttgatattggttactactttcctttgctccacacatc 45100081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 11049833 - 11049887
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttttattggtg 96  Q
    ||||| |||||||||||||||||| |||||||||  ||||  |||||||||||||    
T  11049833 actttgatattggttactactttcttttgctccacgcatcatagttttattggtg 11049887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 33162333 - 33162295
Alignment:
Q  43 ctttaatattggttactactttcctttgctccatacatc 81  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  33162333 ctttgatattggttactactttcctttgctccacacatc 33162295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 42362633 - 42362714
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaacac 123  Q
    ||||| || ||||||||||||||||||||||||| |||||  ||||| ||||||||  |||| |  |||||||||||||||||    
T  42362633 actttgattttggttactactttcctttgctccacacatcatagtttgtattggtgtgattt-tgagtccgaattcacaacac 42362714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 36987947 - 36987875
Alignment:
Q  50 attggttactactttcctttgctccatacatctaagttt-tattggtgcaatttatttgtccgaattcacaaca 122  Q
    |||||||||||||||||||||||||| |||||  ||||| ||||||||  |||| |  ||||||||||||||||    
T  36987947 attggttactactttcctttgctccacacatcatagtttgtattggtgtgattt-tgagtccgaattcacaaca 36987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 4484201 - 4484169
Alignment:
Q  49 tattggttactactttcctttgctccatacatc 81  Q
    ||||||||||||||||||||||||||| |||||    
T  4484201 tattggttactactttcctttgctccacacatc 4484169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 36205538 - 36205506
Alignment:
Q  49 tattggttactactttcctttgctccatacatc 81  Q
    ||||||||||||||||||||||||||| |||||    
T  36205538 tattggttactactttcctttgctccacacatc 36205506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 1382 - 1343
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  1382 actttaatattgattactactttcctttgctccacacatc 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 434822 - 434861
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  434822 actttaataatggttactactttcctttgctccacacatc 434861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 5408950 - 5408911
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  5408950 actttgatattggttactactttcctttgctccacacatc 5408911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 5413275 - 5413236
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  5413275 actttgatattggttactactttcctttgctccacacatc 5413236  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 9182911 - 9182872
Alignment:
Q  42 actttaatattggttactactttcctttgctccatacatc 81  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  9182911 actttgatattggttactactttcctttgctccacacatc 9182872  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 28137291 - 28137258
Alignment:
Q  42 actttaatattggttactactttcctttgctcca 75  Q
    ||||| ||||||||||||||||||||||||||||    
T  28137291 actttgatattggttactactttcctttgctcca 28137258  T

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Target: scaffold0076 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 16195 - 16265
Alignment:
Q  50 attggttactactttcctttgctccatacatctaagttttattggtgcaatttatttgtccgaattcacaaca 122  Q
    |||| ||||||||| ||||||||| | |||||||||||||||||||| || ||||| || | |||||||||||    
T  16195 attgattactactt-cctttgctcgacacatctaagttttattggtgtaa-ttattagttcaaattcacaaca 16265  T

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