View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0930_low_37 (Length: 250)

Name: NF0930_low_37
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0930_low_37
NF0930_low_37
[»] chr2 (7 HSPs)
chr2 (7-113)||(35016259-35016365)
chr2 (7-96)||(37794604-37794693)
chr2 (7-108)||(17988928-17989029)
chr2 (7-139)||(5430276-5430408)
chr2 (7-103)||(19263860-19263956)
chr2 (18-78)||(20929880-20929940)
chr2 (17-52)||(11808663-11808698)
[»] chr1 (6 HSPs)
chr1 (7-108)||(9457742-9457843)
chr1 (7-108)||(9461839-9461940)
chr1 (7-138)||(32617481-32617612)
chr1 (7-108)||(12990642-12990743)
chr1 (7-138)||(34664906-34665039)
chr1 (17-63)||(26828605-26828651)
[»] chr6 (4 HSPs)
chr6 (8-108)||(26660557-26660657)
chr6 (8-108)||(26766528-26766628)
chr6 (7-113)||(9177720-9177818)
chr6 (56-138)||(8169049-8169131)
[»] chr4 (8 HSPs)
chr4 (7-113)||(25968127-25968237)
chr4 (7-135)||(28147110-28147238)
chr4 (7-107)||(55606188-55606288)
chr4 (9-118)||(13198011-13198120)
chr4 (7-97)||(11440695-11440785)
chr4 (17-138)||(21315477-21315598)
chr4 (9-71)||(29866152-29866214)
chr4 (9-60)||(38411857-38411908)
[»] chr5 (9 HSPs)
chr5 (7-138)||(13424551-13424681)
chr5 (15-138)||(41283626-41283749)
chr5 (20-138)||(19967627-19967745)
chr5 (142-191)||(36605389-36605438)
chr5 (14-51)||(39426088-39426125)
chr5 (8-107)||(36491615-36491714)
chr5 (17-71)||(37247652-37247706)
chr5 (17-93)||(6887910-6887986)
chr5 (7-51)||(22927062-22927106)
[»] chr8 (7 HSPs)
chr8 (7-108)||(23489911-23490011)
chr8 (7-51)||(13402210-13402254)
chr8 (7-50)||(13396912-13396955)
chr8 (11-51)||(14370815-14370855)
chr8 (17-93)||(20762728-20762804)
chr8 (12-141)||(45191525-45191652)
chr8 (7-51)||(7154254-7154298)
[»] chr7 (8 HSPs)
chr7 (7-102)||(45435552-45435647)
chr7 (7-90)||(47363662-47363745)
chr7 (7-46)||(10493372-10493411)
chr7 (7-51)||(25635901-25635945)
chr7 (7-102)||(7493011-7493105)
chr7 (7-49)||(33049254-33049296)
chr7 (22-59)||(35451056-35451093)
chr7 (7-51)||(39653454-39653498)
[»] chr3 (2 HSPs)
chr3 (7-44)||(53527193-53527230)
chr3 (7-51)||(11783404-11783448)
[»] scaffold0006 (1 HSPs)
scaffold0006 (17-93)||(75596-75672)


Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 35016365 - 35016259
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcg 106  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||  ||| | |||||||||||||   ||||||||||||||||||||||||||||| |    
T  35016365 tatttaagagttgtgtaatgttgtgattaattcacaccgcgacaaccgcagtttgtatcgcaacacctttaacggccgaaatcgcgaaatcctatacggg 35016266  T
Q  107 actgcga 113  Q
    |||||||    
T  35016265 actgcga 35016259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 37794693 - 37794604
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaat 96  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||| | |||||||||||||||||||||    
T  37794693 tatttaagagttgtgcaatgttgtgattaattcacaccacgacaaccgcaatctgtatcgcaacacccataacggccgaaatcgcgaaat 37794604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 17989029 - 17988928
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcg 106  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||  |||||| |||||||||||| |||||| |||||||| |||||||||| ||||||    
T  17989029 tatttaagagttgtgcaatattgtgattaattcacacctcgacaaccgcaatccgtatcgcaacacccgtaacagccgaaattgcgaaatcctgtacgcg 17988930  T
Q  107 ac 108  Q
    ||    
T  17988929 ac 17988928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 5430276 - 5430408
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcg 106  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||   |||||||||  ||||||  ||||||  |||||||||  ||||| ||||||||    
T  5430276 tatttaagagttgtgcaatattgtgattaattcacaccgcgacaaccacaatctgtaatgcaacatccgtaacaaccgaaatcgtaaaatcatatacgcg 5430375  T
Q  107 actgcgaacttgaccacgaccgttatttaaaat 139  Q
    || ||||  |||  | ||||| |||||||||||    
T  5430376 accgcgacattgttcgcgaccattatttaaaat 5430408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 19263860 - 19263956
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatac 103  Q
    ||||||||| |||||||||||||| ||||||||||| ||| ||||  |||||   ||||||||||| | ||||  |||||||||| ||||| |||||    
T  19263860 tatttaagaattgtgcaatgttgtgattaattcacagcgcaacaaccgcaattgatatcgcaacacccataacaaccgaaatcgcaaaatcatatac 19263956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 20929880 - 20929940
Alignment:
Q  18 tgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaa 78  Q
    |||||| |||||| ||||||||||||||||||||  || |||||||||||| |||||||||    
T  20929880 tgtgcattgttgtgattaattcacaccgcgacaaccgcgatctgtatcgcagcactcgtaa 20929940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 11808663 - 11808698
Alignment:
Q  17 ttgtgcaatgttgttattaattcacaccgcgacaat 52  Q
    |||||||||||||| |||||||||||||||||||||    
T  11808663 ttgtgcaatgttgtaattaattcacaccgcgacaat 11808698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 9457742 - 9457843
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcg 106  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||  |||||| |||||||||||| | ||||| ||||||||| |||||||||||||||    
T  9457742 tatttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtatcgcaacacccataacgaccgaaatcgtgaaatcctatacgcg 9457841  T
Q  107 ac 108  Q
    ||    
T  9457842 ac 9457843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 9461839 - 9461940
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcg 106  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||  |||||| |||||||||||| | ||||| ||||||||| |||||||||||||||    
T  9461839 tatttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtatcgcaacacccataacgaccgaaatcgtgaaatcctatacgcg 9461938  T
Q  107 ac 108  Q
    ||    
T  9461939 ac 9461940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 32617612 - 32617481
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcg 106  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||  ||||||  ||||||||||| |||||||| ||||||||| ||||| | || ||     
T  32617612 tatttaagagttgtgcaatgttgtgattaatttacaccgcgacaaccgcaatccatatcgcaacacccgtaacggtcgaaatcgcaaaatcatgtatgca 32617513  T
Q  107 actgcgaacttgaccacgaccgttatttaaaa 138  Q
    || |||| ||| ||| |||||||| |||||||    
T  32617512 accgcgaccttaaccgcgaccgttttttaaaa 32617481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 12990642 - 12990743
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcg 106  Q
    |||||||||||||||||||||||| | ||||||||||||||||||  ||||||  |||| ||||||  ||||||||| |||||  |||||||||||||||    
T  12990642 tatttaagagttgtgcaatgttgtgactaattcacaccgcgacaactgcaatccttatcccaacacatgtaacggccaaaatcaggaaatcctatacgcg 12990741  T
Q  107 ac 108  Q
    ||    
T  12990742 ac 12990743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 34664906 - 34665039
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaat--cgcgaaatcctatacg 104  Q
    ||||||| |||||||||||||||| ||||||||| |||| |||||   |||||  ||  ||||||  ||||||  |||||||  ||| ||||||||||||    
T  34664906 tatttaaaagttgtgcaatgttgtaattaattcataccgtgacaaccacaatccataatgcaacatccgtaacaaccgaaattgcgcaaaatcctatacg 34665005  T
Q  105 cgactgcgaacttgaccacgaccgttatttaaaa 138  Q
    |||| | || |||||| ||||| |||||||||||    
T  34665006 cgacggtgaccttgactacgactgttatttaaaa 34665039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 26828605 - 26828651
Alignment:
Q  17 ttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgta 63  Q
    |||||||||||||| ||||||| |||||||||||||  |||||||||    
T  26828605 ttgtgcaatgttgtgattaatttacaccgcgacaataacaatctgta 26828651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 26660657 - 26660557
Alignment:
Q  8 atttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcga 107  Q
    ||||||||||||||||||||||| |||||||||||||| |||||  |||||  |||||||||||||||||||||||||||| | |||||||||||| |||    
T  26660657 atttaagagttgtgcaatgttgtgattaattcacaccgtgacaaccgcaattcgtatcgcaacactcgtaacggccgaaattgtgaaatcctatactcga 26660558  T
Q  108 c 108  Q
    |    
T  26660557 c 26660557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 26766628 - 26766528
Alignment:
Q  8 atttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcga 107  Q
    ||||||||||||||||||||||| |||||||||||||| |||||  |||||  |||||||||||||||||||||||||||| | |||||||||||| |||    
T  26766628 atttaagagttgtgcaatgttgtgattaattcacaccgtgacaaccgcaattcgtatcgcaacactcgtaacggccgaaattgtgaaatcctatactcga 26766529  T
Q  108 c 108  Q
    |    
T  26766528 c 26766528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 9177720 - 9177818
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcg 106  Q
    |||| ||||||||||||||||||| |||||||||||||||       |||||| ||||| |||||| |||||| |||||||  | |||||||||||||||    
T  9177720 tattcaagagttgtgcaatgttgtgattaattcacaccgc-------gcaatcagtatc-caacacccgtaacagccgaaactgtgaaatcctatacgcg 9177811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 8169131 - 8169049
Alignment:
Q  56 aatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcgactgcgaacttgaccacgaccgttatttaaaa 138  Q
    |||| ||||| |||||| ||||| ||||||||||  |||||||||||||| || || | |||||||  || ||||||||||||    
T  8169131 aatccgtatcacaacacccgtaagggccgaaatcatgaaatcctatacgcaaccgctaccttgaccgggatcgttatttaaaa 8169049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 25968127 - 25968237
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcg----cgaaatcctata 102  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  |||||| |||| ||||||| | |||||||||||||||    ||||||||||||    
T  25968127 tatttaagagttgtgcaatgttgtgattaattcacaccgcgacaaccgcaatccgtatagcaacacccataacggccgaaatcgcattcgaaatcctata 25968226  T
Q  103 cgcgactgcga 113  Q
    |||||| ||||    
T  25968227 cgcgaccgcga 25968237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 28147110 - 28147238
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcg 106  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||||| ||||| ||||| ||||||||| || |||||||||| | |    
T  28147110 tatttaagagttgtgcaatgttgtgattaattcacaccgcgacaaccgcactctgtatcgtaacacccgtaatggccgaaattgcaaaatcctatatgtg 28147209  T
Q  107 actgcgaacttgaccacgaccgttattta 135  Q
    || |||| | |||||   |||||||||||    
T  28147210 accgcgaccgtgaccgttaccgttattta 28147238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 55606288 - 55606188
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcg 106  Q
    |||||||||||||||||||||||| |||||||||||  |||||||  | ||||||||||||||||| |||||||  ||||||||| |||||||||| |||    
T  55606288 tatttaagagttgtgcaatgttgtgattaattcacaatgcgacaaccgtaatctgtatcgcaacacccgtaacgatcgaaatcgcaaaatcctatatgcg 55606189  T
Q  107 a 107  Q
    |    
T  55606188 a 55606188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 13198120 - 13198011
Alignment:
Q  9 tttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcgac 108  Q
    |||||||||||||||||||||| |||||||||||||||||||||  |||||  || |||||||| | ||   |||||||||| |||||||||||||||||    
T  13198120 tttaagagttgtgcaatgttgtgattaattcacaccgcgacaatcacaatccttaacgcaacacccatacatgccgaaatcgtgaaatcctatacgcgac 13198021  T
Q  109 tgcgaacttg 118  Q
     |||| ||||    
T  13198020 cgcgatcttg 13198011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 11440695 - 11440785
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatc 97  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||   |||||  || ||||||| ||||||| |||||||||| ||||||    
T  11440695 tatttaagagttgaacaatgttgtgattaattcacaccgcgacaacaacaatccataacgcaacattcgtaacagccgaaatcgtgaaatc 11440785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 21315598 - 21315477
Alignment:
Q  17 ttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcgactgcgaact 116  Q
    ||||||| |||||| |||||||||||||||||| |  | ||||||||  ||||||  |||||| || |||||||||||| |||  ||||||| |||| |     
T  21315598 ttgtgcattgttgtgattaattcacaccgcgacgaccgtaatctgtaatgcaacatccgtaacagctgaaatcgcgaaaaccttaacgcgaccgcgaccg 21315499  T
Q  117 tgaccacgaccgttatttaaaa 138  Q
     ||||  |||||||||||||||    
T  21315498 agaccgtgaccgttatttaaaa 21315477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 29866152 - 29866214
Alignment:
Q  9 tttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaaca 71  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||   ||||||||| |||||||    
T  29866152 tttaagatttgtgcaatgttgtgattaattcacaccacgacaaccacaatctgtaacgcaaca 29866214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 38411908 - 38411857
Alignment:
Q  9 tttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatct 60  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||  |||||||    
T  38411908 tttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatct 38411857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 13424681 - 13424551
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcg 106  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||   |||||||||| || |||| | |||  | |||||| || ||||| ||||||||    
T  13424681 tatttaagagttgtgcaatgttgtgattaattcacaccacgacaactacaatctgtat-gccacacccataagagtcgaaattgcaaaatcttatacgcg 13424583  T
Q  107 actgcgaacttgaccacgaccgttatttaaaa 138  Q
    ||||||| ||||||| ||||||||||||||||    
T  13424582 actgcgaccttgaccgcgaccgttatttaaaa 13424551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 41283626 - 41283749
Alignment:
Q  15 agttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcgactgcgaa 114  Q
    |||||||||||||||| ||||||||||||| ||||||    | || ||||| |||||| |  || |||||||||| |||||||||||| ||||| ||||     
T  41283626 agttgtgcaatgttgtgattaattcacaccacgacaaccatactccgtatcacaacacccaaaatggccgaaatcacgaaatcctataagcgaccgcgac 41283725  T
Q  115 cttgaccacgaccgttatttaaaa 138  Q
    ||||||||||||||||||||||||    
T  41283726 cttgaccacgaccgttatttaaaa 41283749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 19967627 - 19967745
Alignment:
Q  20 tgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcgactgcgaacttga 119  Q
    ||||||||||| |||||||| ||| |||||||  |||||| || | ||||||| | |||||||||||||||||||||||||| ||| ||  ||| |||||    
T  19967627 tgcaatgttgtgattaattctcactgcgacaaccgcaatcagtgttgcaacacccataacggccgaaatcgcgaaatcctatccgcaacctcgaccttga 19967726  T
Q  120 ccacgaccgttatttaaaa 138  Q
    |  ||||||||||||||||    
T  19967727 ctgcgaccgttatttaaaa 19967745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 36605438 - 36605389
Alignment:
Q  142 atgatagtgttttagttcataattttcatgtattgtgtaatcatggggtt 191  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  36605438 atgatagtgttttagttgataattttcatgtattgtgttatcatggggtt 36605389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 39426125 - 39426088
Alignment:
Q  14 gagttgtgcaatgttgttattaattcacaccgcgacaa 51  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  39426125 gagttgtgcaatgttgtaattaattcacaccgcgacaa 39426088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 36491615 - 36491714
Alignment:
Q  8 atttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcga 107  Q
    |||||||| || ||||||||| | |||||||||||||| |||||  | |||| |||  ||||||  |||||| |  |||||||| |||||||||||||||    
T  36491615 atttaagaattttgcaatgttatgattaattcacaccgtgacaaccgtaatccgtagtgcaacatccgtaacagttgaaatcgcaaaatcctatacgcga 36491714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 37247652 - 37247706
Alignment:
Q  17 ttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaaca 71  Q
    ||||||| |||||| ||||||||||||||||||||   ||||||||| |||||||    
T  37247652 ttgtgcattgttgtgattaattcacaccgcgacaaccacaatctgtaacgcaaca 37247706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 6887986 - 6887910
Alignment:
Q  17 ttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcga 93  Q
    ||||||| |||||| || ||||||||||||||  || |||||| |||  ||||||  |||||| |||||||||||||    
T  6887986 ttgtgcattgttgtgatcaattcacaccgcgaagatcgcaatcagtaaagcaacatccgtaacagccgaaatcgcga 6887910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 22927106 - 22927062
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaa 51  Q
    ||||||||||||| |||||||||| ||||||||||  ||||||||    
T  22927106 tatttaagagttgggcaatgttgtgattaattcacgtcgcgacaa 22927062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 23490011 - 23489911
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcg 106  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||  || ||| ||| |||||||| | ||||||||| |||||| ||||||||||||||    
T  23490011 tatttaagagttgtacaatgttgtgattaattcacaccgcaacaaccgc-atccgtaccgcaacacccataacggccggaatcgcaaaatcctatacgcg 23489913  T
Q  107 ac 108  Q
    ||    
T  23489912 ac 23489911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 13402210 - 13402254
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaa 51  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||    
T  13402210 tatttaagagttgtgtaatgttgtgattaattcacaccgcgacaa 13402254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 13396912 - 13396955
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgaca 50  Q
    ||||||||||||||| |||||||| |||||||||||||||||||    
T  13396912 tatttaagagttgtgtaatgttgtgattaattcacaccgcgaca 13396955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 14370815 - 14370855
Alignment:
Q  11 taagagttgtgcaatgttgttattaattcacaccgcgacaa 51  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  14370815 taagagttgtgcaatgttgtgattaattcacaccacgacaa 14370855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 20762804 - 20762728
Alignment:
Q  17 ttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcga 93  Q
    ||||||| |||| | |||||||||||||||||| |  |||||| ||| |||||||  |||||| |||||||||||||    
T  20762804 ttgtgcattgttctgattaattcacaccgcgacgaccgcaatcagtaacgcaacatccgtaacagccgaaatcgcga 20762728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 45191652 - 45191525
Alignment:
Q  12 aagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctatacgcgactgc 111  Q
    ||||||||||||| || || ||||| ||||||| ||||||  |||||||||| | ||||| | |||||   |||||||  |||||||||||||||||  |    
T  45191652 aagagttgtgcaacgtagtgattaactcacaccacgacaaccgcaatctgtaac-caacattagtaacattcgaaatcatgaaatcctatacgcgac-cc 45191555  T
Q  112 gaacttgaccacgaccgttatttaaaattt 141  Q
     | ||| | |||||| ||||||||||||||    
T  45191554 aaccttaagcacgactgttatttaaaattt 45191525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 7154298 - 7154254
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaa 51  Q
    ||||||||| |||||||||||||| ||||||||||| | ||||||    
T  7154298 tatttaagacttgtgcaatgttgtgattaattcacatcacgacaa 7154254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 45435552 - 45435647
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctata 102  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||  ||||| |||| | ||||| | ||||  || |||||| | ||||||||||    
T  45435552 tatttaagagttgtgcaatattgttattaattcacaccgcgataactgcaatgtgtaacacaacatttgtaaaagctgaaatcacaaaatcctata 45435647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 47363745 - 47363662
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcg 90  Q
    ||||||||| |||||||||||| | |||||||||||||  |||||  ||||| | ||||||||||| ||||||||| |||||||    
T  47363745 tatttaagacttgtgcaatgttttgattaattcacaccaagacaaccgcaatttatatcgcaacacccgtaacggctgaaatcg 47363662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 10493411 - 10493372
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgc 46  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  10493411 tatttaagagttgtgcaatgttgtgattaattcacaccgc 10493372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 25635945 - 25635901
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaa 51  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||||    
T  25635945 tatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaa 25635901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 7493105 - 7493011
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcgaaatcctata 102  Q
    ||||||||||||||| |||||||| |||||||||||||| || ||   ||||| | |||| ||||| ||||||  | |||||| ||||||||||||    
T  7493105 tatttaagagttgtgtaatgttgtgattaattcacaccgtgataaccacaatccgaatcg-aacacccgtaacaactgaaatcacgaaatcctata 7493011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 33049254 - 33049296
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgac 49  Q
    |||||||||||||||||||||| | ||||||||||||| ||||    
T  33049254 tatttaagagttgtgcaatgttttgattaattcacacctcgac 33049296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 35451093 - 35451056
Alignment:
Q  22 caatgttgttattaattcacaccgcgacaatggcaatc 59  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  35451093 caatgttgtgattaattcacaccgcaacaatggcaatc 35451056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 39653498 - 39653454
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaa 51  Q
    ||||||||||||||| ||| |||| ||||||||||||||| ||||    
T  39653498 tatttaagagttgtggaatattgtgattaattcacaccgcaacaa 39653454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 53527193 - 53527230
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacacc 44  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  53527193 tatttaaaagttgtgcaatgttgtgattaattcacacc 53527230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 11783448 - 11783404
Alignment:
Q  7 tatttaagagttgtgcaatgttgttattaattcacaccgcgacaa 51  Q
    |||||||||||||||||||||||| |||| ||||||  |||||||    
T  11783448 tatttaagagttgtgcaatgttgtaattacttcacaaagcgacaa 11783404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 75596 - 75672
Alignment:
Q  17 ttgtgcaatgttgttattaattcacaccgcgacaatggcaatctgtatcgcaacactcgtaacggccgaaatcgcga 93  Q
    ||||||| |||| | |||||||||||||||||| |  |||||| ||| |||||||  |||||  |||||||||||||    
T  75596 ttgtgcattgttctgattaattcacaccgcgacgaccgcaatcagtaacgcaacatacgtaatagccgaaatcgcga 75672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University