View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0930_low_38 (Length: 229)

Name: NF0930_low_38
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0930_low_38
NF0930_low_38
[»] chr1 (3 HSPs)
chr1 (88-170)||(41602821-41602903)
chr1 (88-170)||(16263771-16263853)
chr1 (96-168)||(41602121-41602193)
[»] chr4 (4 HSPs)
chr4 (89-169)||(9470307-9470390)
chr4 (88-170)||(6230143-6230225)
chr4 (88-170)||(56395550-56395632)
chr4 (88-168)||(9471011-9471091)
[»] chr7 (4 HSPs)
chr7 (88-170)||(2946532-2946614)
chr7 (88-170)||(6483601-6483683)
chr7 (88-170)||(33141937-33142019)
chr7 (88-170)||(37998041-37998123)
[»] chr5 (1 HSPs)
chr5 (88-170)||(41196077-41196159)
[»] chr3 (1 HSPs)
chr3 (88-170)||(50035376-50035458)
[»] chr2 (3 HSPs)
chr2 (88-170)||(23988321-23988403)
chr2 (88-167)||(29100044-29100123)
chr2 (90-167)||(9206797-9206875)
[»] chr6 (1 HSPs)
chr6 (88-170)||(14799521-14799603)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 41602821 - 41602903
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgcc 170  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41602821 gtaattaggtgttggaggtatatagtaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgcc 41602903  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 16263853 - 16263771
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgcc 170  Q
    |||||| ||||| ||||||||||| |||||||||  ||||||| || ||||    ||||||||||||||||||||||||||||    
T  16263853 gtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttccttttatccaatggttcatatttattttgcc 16263771  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 41602193 - 41602121
Alignment:
Q  96 gtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttg 168  Q
    ||||| ||||| |||| |||||||||  ||||||| || |||||   ||||||||||||||||||||||||||    
T  41602193 gtgttagaggtgtataataagcattttgatccaaagttaatttacttttatccaatggttcatatttattttg 41602121  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 9470390 - 9470307
Alignment:
Q  89 taattaggtgttggaggta---tatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgc 169  Q
    ||||||||||| |||||||   |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9470390 taattaggtgtgggaggtagtatatagtaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgc 9470307  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 6230225 - 6230143
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgcc 170  Q
    |||||| ||||| ||||||||||| |||||||||  ||||||| || |||||   ||||||||||||||||||||||||||||    
T  6230225 gtaattcggtgtgggaggtatatagtaagcattttgatccaaatttaatttacttttatccaatggttcatatttattttgcc 6230143  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 56395632 - 56395550
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgcc 170  Q
    |||||| ||||| ||||||||||| |||||||||  ||||||| || |||||   ||||||||||||||||||||||||||||    
T  56395632 gtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttcatatttattttgcc 56395550  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 9471011 - 9471091
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttg 168  Q
    |||||| |||||| ||||| | || |||||||||  ||||||| || |||||   ||||| ||||||||||||||||||||    
T  9471011 gtaattgggtgttagaggtgtgtagtaagcattttgatccaaagttaatttacttttatctaatggttcatatttattttg 9471091  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 2946614 - 2946532
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgcc 170  Q
    |||||| ||||| ||||||||||| |||||||||  ||||||| || |||||   ||||||||||||||||||||||||||||    
T  2946614 gtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttcatatttattttgcc 2946532  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 6483683 - 6483601
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgcc 170  Q
    |||||| ||||| ||||||||||| |||||||||  ||||||| || |||||   ||||||||||||||||||||||||||||    
T  6483683 gtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttcatatttattttgcc 6483601  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 33142019 - 33141937
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgcc 170  Q
    |||||| ||||| ||||||||||| |||||||||  ||||||| || |||||   ||||||||||||||||||||||||||||    
T  33142019 gtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttcatatttattttgcc 33141937  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 37998041 - 37998123
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgcc 170  Q
    |||||| ||||| ||||||||||| |||||||||  ||||||| || |||||   ||||||||||||||||||||||||||||    
T  37998041 gtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttcatatttattttgcc 37998123  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 41196159 - 41196077
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgcc 170  Q
    |||||| ||||| ||||||||||| |||||||||  ||||||| || |||||   ||||||||||||||||||||||||||||    
T  41196159 gtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttcatatttattttgcc 41196077  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 50035458 - 50035376
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgcc 170  Q
    |||||| ||||| ||||||||||| |||||||||  ||||||| || |||||   ||||||||||||||||||||||||||||    
T  50035458 gtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttcatatttattttgcc 50035376  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 23988403 - 23988321
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgcc 170  Q
    |||||| ||||| ||||||||||| |||||||||  ||||||| || |||||   ||||||||| ||||||||||||||||||    
T  23988403 gtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatagttcatatttattttgcc 23988321  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 29100123 - 29100044
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttatttt 167  Q
    |||||| ||||| ||||||||||| ||| |||||  ||||||| || |||||   |||||||||||||||||||||||||    
T  29100123 gtaattcggtgtgggaggtatatagtaaacattttgatccaaagttaatttacttttatccaatggttcatatttatttt 29100044  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 9206797 - 9206875
Alignment:
Q  90 aattaggtgttggaggtatatattaagcatttgaatccaaaattgattta-tccttatccaatggttcatatttatttt 167  Q
    |||| |||||||||||| |||| |||| ||||  |||||||| | | ||| ||||||||||||||||||||||||||||    
T  9206797 aattgggtgttggaggtgtatagtaagtattttgatccaaaaattagttaatccttatccaatggttcatatttatttt 9206875  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 14799603 - 14799521
Alignment:
Q  88 gtaattaggtgttggaggtatatattaagcatttgaatccaaaattgatttatccttatccaatggttcatatttattttgcc 170  Q
    |||||| ||||| ||||||||||| |||| ||||  ||||||| || |||||   |||| |||||||||||||||||||||||    
T  14799603 gtaattcggtgtgggaggtatatagtaagaattttgatccaaagttaatttacttttattcaatggttcatatttattttgcc 14799521  T

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