View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0930_low_39 (Length: 217)
Name: NF0930_low_39
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0930_low_39 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 47426487 - 47426690
Alignment:
| Q |
3 |
ttcaatattgaatctttgcttactttgtaccattcaagaattcacgagtaataataggaatcatcactagtagtaaccgcatagctaccaaaggaatcat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47426487 |
ttcaatattgaatctttgcttactttgtaccattcaagaattcacgagtaataataggaatcatcactagtagtaaccgcatagctaccaaaggaatcat |
47426586 |
T |
|
| Q |
103 |
gcttactctccttcattgaattaacaacccaatgatcatagcgtgctgagtttgacaacatattttgcttcaaagaagcaaattctatagacttgtttct |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47426587 |
gcttactctccttcattgaattaacaacccaatgatcatagcgtgctgagtttgacaacatattttgcttcaaagaagcaaattctatagacttgtttct |
47426686 |
T |
|
| Q |
203 |
ctgt |
206 |
Q |
| |
|
|||| |
|
|
| T |
47426687 |
ctgt |
47426690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University