View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0930_low_4 (Length: 526)

Name: NF0930_low_4
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0930_low_4
NF0930_low_4
[»] chr4 (11 HSPs)
chr4 (30-304)||(52597221-52597489)
chr4 (297-411)||(52597800-52597914)
chr4 (426-518)||(52598017-52598109)
chr4 (30-161)||(1143491-1143621)
chr4 (30-144)||(46395205-46395319)
chr4 (30-139)||(221558-221667)
chr4 (30-143)||(5486965-5487078)
chr4 (30-143)||(44820337-44820450)
chr4 (30-143)||(18903231-18903345)
chr4 (30-143)||(29285193-29285306)
chr4 (101-145)||(42433538-42433582)
[»] chr7 (11 HSPs)
chr7 (30-146)||(38032493-38032609)
chr7 (30-139)||(21859539-21859648)
chr7 (37-146)||(21237051-21237160)
chr7 (30-143)||(31590276-31590389)
chr7 (30-139)||(45688394-45688503)
chr7 (30-143)||(35444742-35444855)
chr7 (101-146)||(38026396-38026441)
chr7 (98-145)||(43126888-43126935)
chr7 (30-67)||(45885542-45885579)
chr7 (101-145)||(7845504-7845548)
chr7 (98-146)||(30604241-30604289)
[»] chr2 (3 HSPs)
chr2 (34-161)||(15675724-15675850)
chr2 (30-144)||(4622864-4622978)
chr2 (101-163)||(20965017-20965078)
[»] chr3 (5 HSPs)
chr3 (36-139)||(26041626-26041729)
chr3 (30-146)||(44790940-44791056)
chr3 (30-146)||(3858435-3858551)
chr3 (30-143)||(24735441-24735554)
chr3 (104-146)||(37826908-37826950)
[»] chr5 (6 HSPs)
chr5 (30-145)||(16855456-16855571)
chr5 (54-144)||(32903439-32903529)
chr5 (30-143)||(42885545-42885658)
chr5 (30-146)||(26503128-26503243)
chr5 (34-146)||(28247333-28247444)
chr5 (98-146)||(15921648-15921696)
[»] chr8 (3 HSPs)
chr8 (30-146)||(33358991-33359106)
chr8 (30-160)||(41137545-41137673)
chr8 (101-144)||(43953613-43953656)
[»] chr1 (3 HSPs)
chr1 (30-83)||(3303475-3303528)
chr1 (30-146)||(17145440-17145556)
chr1 (30-72)||(51004312-51004354)
[»] chr6 (2 HSPs)
chr6 (98-146)||(28590515-28590563)
chr6 (51-146)||(32923445-32923540)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 30 - 304
Target Start/End: Original strand, 52597221 - 52597489
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||| | |||||||||||||||| ||| | |      ||    
T  52597221 catggatacctcaatatccgcgggtacccgcatagtggatacccatgaggatacgggacgggcacgggtatcatatttatccaacgggacag------at 52597314  T
Q  130 atcatactatccgtaccgcattgacatccctaatgacggagcaagctaagtatctttatataatatcgagaggccagattgcagtgcatgtttatctttt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52597315 atcatactatccgtaccgcattgacatccctaatgacggagcaagccaagtatctttatataatatcgagaggccagattgcagtgcatgtttatctttt 52597414  T
Q  230 agattgttgttgatccacacaagtatgaaatatatgactcaattattgttcgagtcaagcatgcatagaatggta 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52597415 agattgttgttgatccacacaagtatgaaatatatgactcaattattgttcgagtcaagcatgcatagaatggta 52597489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 297 - 411
Target Start/End: Original strand, 52597800 - 52597914
Alignment:
Q  297 gaatggtatgcgtcgtagagctaaaattttgtctctagcgtgatgtgcatgcaacaaatttgaagcaatccacttccacagtccaatcatcttccaccaa 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52597800 gaatggtatgcgtcgtagagctaaaattttgtctctagcgtgatgtgcatgcaacaaatttgaagcaatccacttccacagtccaatcatcttccactaa 52597899  T
Q  397 gcttccccaacatgt 411  Q
    |||||||||||||||    
T  52597900 gcttccccaacatgt 52597914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 426 - 518
Target Start/End: Original strand, 52598017 - 52598109
Alignment:
Q  426 tccaaaacaaattgttaggtattttcggaatttagaaatcgaaaaaagcagaatatgaagaatttttcgtatttgatatcagacgtctctgct 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  52598017 tccaaaacaaattgttaggtattttcggaatttagaaatcgaaaaaagcagaatatgaagaattgttcgtatttgatatcaaacgtctctgct 52598109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 1143491 - 1143621
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    |||||||||||||||||||  | |||||||||||| || |||| | |||||| |||||  ||||| | || ||||||||||||| |||| |||| ||| |    
T  1143491 catggatacctcaatacccatgtgtacccgcatagcgggtacccacgaggatgcgggacgggcacgggtaacatatttatccaacggggtggggacgggt 1143590  T
Q  130 atcatactatccgtaccgcattgacatcccta 161  Q
    ||||||||||  ||||| ||||||||||||||    
T  1143591 atcatactatgagtacc-cattgacatcccta 1143621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 46395205 - 46395319
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||||||||| ||||| ||||||| |||||||||| |||| | |||| | |||| | ||||| | |||||| ||||||||| ||||||||| ||| |    
T  46395205 catggatacctcattacccacgggtacacgcatagtgggtacccacgagggtgcggggtgggcacgggtatcatctttatccaacggggcggggacgggt 46395304  T
Q  130 atcatactatccgta 144  Q
    |||||| ||||||||    
T  46395305 atcatattatccgta 46395319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 221558 - 221667
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||| ||||||||||| |||||||||||||||||| |||| |||||  |||||| | | ||| | || |||||||||||||  |||||||| ||| |    
T  221558 catggatccctcaatacccacgggtacccgcatagtgggtacccatgagcgtacggggtggacacgggtaccatatttatccaacagggcggggacgggt 221657  T
Q  130 atcatactat 139  Q
    ||||||||||    
T  221658 atcatactat 221667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 5486965 - 5487078
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||||| ||||||||| ||||||||| |||| |||||||| ||| || ||||||   ||||  | |||||| ||||||||| ||||||||  ||| |    
T  5486965 catggatacttcaatacccacgggtacccacataatggatacccatgtgggtacggggcgggcatgggtatcatgtttatccaacggggcgggcacgggt 5487064  T
Q  130 atcatactatccgt 143  Q
    ||||||||||||||    
T  5487065 atcatactatccgt 5487078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 44820450 - 44820337
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||||| ||||||||| ||||||||| |||| ||| |||| ||| || ||||||   ||||  | |||||| ||||||||| ||||||||  ||| |    
T  44820450 catggatacttcaatacccacgggtacccacataatgggtacccatgtgggtacggggcgggcatgggtatcatgtttatccaacggggcgggcacgggt 44820351  T
Q  130 atcatactatccgt 143  Q
    ||||||||||||||    
T  44820350 atcatactatccgt 44820337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 18903231 - 18903345
Alignment:
Q  30 catggatacctcaatacccgcgggt-acccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcgga 128  Q
    ||||||||||||||||||| ||||| ||||| ||||||| |||| | | || ||||||   |||||   |||| |||||||| || |||| |||| |||     
T  18903231 catggatacctcaatacccacgggttacccgtatagtgggtacccacgcgggtacggggcgggcacgtgtatcgtatttatctaacggggtggggacggc 18903330  T
Q  129 tatcatactatccgt 143  Q
    |||||||||||||||    
T  18903331 tatcatactatccgt 18903345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 29285193 - 29285306
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||||| ||||||||| ||||||||| |||| ||| |||| | | || ||||||   ||||  | |||||| ||||||||| |||||||   ||| |    
T  29285193 catggatacttcaatacccacgggtacccacataatgggtacccacgtgggtacggggcgggcatgggtatcatgtttatccaacggggcggacacgggt 29285292  T
Q  130 atcatactatccgt 143  Q
    ||||||||||||||    
T  29285293 atcatactatccgt 29285306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 42433538 - 42433582
Alignment:
Q  101 catatttatccaatggggcgggggcggatatcatactatccgtac 145  Q
    |||||||||||||| |||||| | |||||||||||||||| ||||    
T  42433538 catatttatccaatagggcggagacggatatcatactatctgtac 42433582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 38032493 - 38032609
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    |||||||||||||||||||||||||||| ||||||||| || | | |||| |||||||  |||||   ||||||||||| |||| ||||||||| |||||    
T  38032493 catggatacctcaatacccgcgggtacctgcatagtgggtatccacgaggttacgggacgggcacgagtatcatatttacccaacggggcggggacggat 38032592  T
Q  130 atcatactatccgtacc 146  Q
    ||||||||||| |||||    
T  38032593 atcatactatctgtacc 38032609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 21859539 - 21859648
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||| |||||||||||  ||||||| |||||||||||||| ||||||||||||||  | ||| ||||||||||||||||||  | |||||| ||  |    
T  21859539 catggatccctcaatacccatgggtacctgcatagtggatacccatgaggatacgggacggacaccgatatcatatttatccaacagagcggggacgagt 21859638  T
Q  130 atcatactat 139  Q
    ||||||||||    
T  21859639 atcatactat 21859648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 21237051 - 21237160
Alignment:
Q  37 acctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggatatcatac 136  Q
    |||||||||||||| ||||||  |||||||| |||| | |||| ||||||   ||||| | |||||||||||||||| ||| |||||  || ||||||||    
T  21237051 acctcaatacccgcaggtacctacatagtgggtacccacgagggtacggggcgggcacgggtatcatatttatccaacgggacggggatgggtatcatac 21237150  T
Q  137 tatccgtacc 146  Q
    ||||||||||    
T  21237151 tatccgtacc 21237160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 31590276 - 31590389
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||||| ||||||||| ||||||||| |||| ||| |||| ||| || ||||||   ||||  | |||||| ||||||||| ||||||||  ||| |    
T  31590276 catggatacttcaatacccacgggtacccacataatgggtacccatgtgggtacggggcgggcatgggtatcatgtttatccaacggggcgggcacgggt 31590375  T
Q  130 atcatactatccgt 143  Q
    ||||||||||||||    
T  31590376 atcatactatccgt 31590389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 45688503 - 45688394
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    |||||||||||||||| | ||| | ||||||||||||| || | |  ||| ||| |||  |||||| ||||||||||||||||||||| |||||  | ||    
T  45688503 catggatacctcaatatctgcgagcacccgcatagtgggtatccacaagggtacaggacgggcacatatatcatatttatccaatgggacggggaagtat 45688404  T
Q  130 atcatactat 139  Q
    ||||||||||    
T  45688403 atcatactat 45688394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 35444855 - 35444742
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||||| |||||||||  |||||||| |||| ||| |||| ||| || ||||||   ||||  | |||||| ||||||||| ||||||||  ||| |    
T  35444855 catggatacttcaatacccatgggtacccacataatgggtacccatgtgggtacggggcgggcatgggtatcatgtttatccaacggggcgggcacgggt 35444756  T
Q  130 atcatactatccgt 143  Q
    ||||||||||||||    
T  35444755 atcatactatccgt 35444742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 38026396 - 38026441
Alignment:
Q  101 catatttatccaatggggcgggggcggatatcatactatccgtacc 146  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||    
T  38026396 catatttatccaacggggcggggacggatatcatactacccgtacc 38026441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 43126935 - 43126888
Alignment:
Q  98 tatcatatttatccaatggggcgggggcggatatcatactatccgtac 145  Q
    |||||| ||||| ||||||||||| | |||||||||||||||||||||    
T  43126935 tatcatgtttattcaatggggcggagacggatatcatactatccgtac 43126888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 45885542 - 45885579
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtgg 67  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  45885542 catgaatacctcaatacccgcgggtatccgcatagtgg 45885579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 7845548 - 7845504
Alignment:
Q  101 catatttatccaatggggcgggggcggatatcatactatccgtac 145  Q
    |||| |||||||| ||||||||| |||||||||||||| ||||||    
T  7845548 cataattatccaacggggcggggacggatatcatactacccgtac 7845504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 30604241 - 30604289
Alignment:
Q  98 tatcatatttatccaatggggcgggggcggatatcatactatccgtacc 146  Q
    ||||||||||||| || ||||||||| || ||||||||||| |||||||    
T  30604241 tatcatatttatctaacggggcggggacgaatatcatactacccgtacc 30604289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 15675850 - 15675724
Alignment:
Q  34 gatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggatatca 133  Q
    |||||||||||||||||||||||||||||||||| | || |||||| ||||||   || || | ||||||||||||||||| |||||| | ||| |||||    
T  15675850 gatacctcaatacccgcgggtacccgcatagtgggtgcccatgagggtacggggcgggtacgggtatcatatttatccaatagggcggtgacgggtatca 15675751  T
Q  134 tactatccgtaccgcattgacatcccta 161  Q
    || ||||| |||| ||||||||||||||    
T  15675750 tattatccatacc-cattgacatcccta 15675724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 4622864 - 4622978
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    |||| |||||||||||||| ||| ||||| |||||||| |||||| |||| |||| |   |  ||   |||||||||||||||||||||||| | ||| |    
T  4622864 catgaatacctcaatacccacggatacccacatagtgggtacctacgagggtacgaggcggatacgtgtatcatatttatccaatggggcggagacgggt 4622963  T
Q  130 atcatactatccgta 144  Q
    |||||||||||||||    
T  4622964 atcatactatccgta 4622978  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 20965078 - 20965017
Alignment:
Q  101 catatttatccaatggggcgggggcggatatcatactatccgtaccgcattgacatccctaat 163  Q
    ||||||||||||| | ||||||| ||||||| |||||| || |||| ||||||||||||||||    
T  20965078 catatttatccaacgaggcggggacggatataatactacccttacc-cattgacatccctaat 20965017  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 26041729 - 26041626
Alignment:
Q  36 tacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggatatcata 135  Q
    ||||||||||||||| |||||||| |||||||||||| |||| | |||||||  | |||   |||||||||||||||| ||||||| | |||||||||||    
T  26041729 tacctcaatacccgcaggtacccgtatagtggatacccatgatggtacgggacggacacgagtatcatatttatccaacggggcggagacggatatcata 26041630  T
Q  136 ctat 139  Q
    ||||    
T  26041629 ctat 26041626  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 44791056 - 44790940
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||||||||||||||| ||| |||| ||||||||| | || |||||| ||||||   | ||||  |||||| ||||| ||| ||||||||| ||| |    
T  44791056 catggatacctcaatacccacggatacctgcatagtgggtgcccatgagggtacggggcggacacatgtatcatttttatacaacggggcggggacgggt 44790957  T
Q  130 atcatactatccgtacc 146  Q
    |||||||||||||||||    
T  44790956 atcatactatccgtacc 44790940  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 3858435 - 3858551
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||||||||||||||| ||||| ||| |||||||  |||| | |||| ||||||   ||||| |||| ||||||||||||| |||| |||| ||  |    
T  3858435 catggatacctcaatacccacgggtgcccacatagtgcgtacccacgagggtacggggcgggcacggataacatatttatccaacggggtggggacgtgt 3858534  T
Q  130 atcatactatccgtacc 146  Q
    |||||||||| ||||||    
T  3858535 atcatactattcgtacc 3858551  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 24735554 - 24735441
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||||| |||||||||  |||||||| |||| |||||||| |||  ||||||||   ||||  | |||||| ||||||||| ||||||||  ||| |    
T  24735554 catggatacttcaatacccatgggtacccacataatggatacccatgtagatacggggcgggcatgggtatcatgtttatccaacggggcgggcacgggt 24735455  T
Q  130 atcatactatccgt 143  Q
    ||||||||||||||    
T  24735454 atcatactatccgt 24735441  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 37826950 - 37826908
Alignment:
Q  104 atttatccaatggggcgggggcggatatcatactatccgtacc 146  Q
    |||||||||| ||||||||| |||||||||||||| |||||||    
T  37826950 atttatccaacggggcggggacggatatcatactacccgtacc 37826908  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 16855571 - 16855456
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    |||| ||||||||||||||||||||||||||||||||| |||| | |||  |||||| | |||||   |||||| ||||||||| ||||||| | ||  |    
T  16855571 catgaatacctcaatacccgcgggtacccgcatagtgggtacccacgagagtacggggtgggcacgagtatcatttttatccaacggggcggagacgcgt 16855472  T
Q  130 atcatactatccgtac 145  Q
    ||||||||||| ||||    
T  16855471 atcatactatctgtac 16855456  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 32903529 - 32903439
Alignment:
Q  54 tacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggatatcatactatccgta 144  Q
    ||||||| |||||| |||| | ||||||||||||  ||||| | |||||||||||||||| ||||||||  | ||||||||||||||||||    
T  32903529 tacccgcgtagtgggtacccaagaggatacgggacgggcacgggtatcatatttatccaacggggcgggaacagatatcatactatccgta 32903439  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 42885545 - 42885658
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||||| ||||||||| ||||||||| |||| ||| |||| ||| || |||||| | ||||  | |||||| ||||||||| ||||||||  ||| |    
T  42885545 catggatacttcaatacccacgggtacccacataatgggtacccatgtgggtacggggtgggcatgggtatcatgtttatccaacggggcgggcacgggt 42885644  T
Q  130 atcatactatccgt 143  Q
    ||||||||||||||    
T  42885645 atcatactatccgt 42885658  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 26503128 - 26503243
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||||| |||||| |||||||||||||||||||||||||  | |||| || ||| | |  || | |||||||||||||||| ||||| ||| ||| |    
T  26503128 catggatacttcaatatccgcgggtacccgcatagtggatacgcacgagggtaaggggtggatacgggtatcatatttatccaacggggcagggacgggt 26503227  T
Q  130 atcatactatccgtacc 146  Q
    |||| ||| ||||||||    
T  26503228 atca-actctccgtacc 26503243  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 28247333 - 28247444
Alignment:
Q  34 gatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggatatca 133  Q
    |||||||||||||||  || ||||||||||||||||||| | |||| |||| |   ||| |||||||||||||||||| | ||| ||||| ||  |||||    
T  28247333 gatacctcaatacccatggatacccgcatagtggatacccacgagggtacgaggcgggcgcagatatcatatttatcc-acgggacggggacgagtatca 28247431  T
Q  134 tactatccgtacc 146  Q
    || ||||||||||    
T  28247432 tattatccgtacc 28247444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 15921648 - 15921696
Alignment:
Q  98 tatcatatttatccaatggggcgggggcggatatcatactatccgtacc 146  Q
    |||||||||||||||| ||||||||  ||| ||||||| ||||||||||    
T  15921648 tatcatatttatccaacggggcgggaacgggtatcatattatccgtacc 15921696  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 33359106 - 33358991
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    |||||||| |||||||||| ||||||| || |||||||||||| | ||||||| |||   | ||  | ||||||||||||  |||||||| ||| |||||    
T  33359106 catggatatctcaatacccacgggtacacgtatagtggatacccacgaggataggggcg-gacatgggtatcatatttatttaatggggcagggacggat 33359008  T
Q  130 atcatactatccgtacc 146  Q
    |||||||||||||||||    
T  33359007 atcatactatccgtacc 33358991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 41137673 - 41137545
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    |||||||||||||||||||  |||||||||  ||||||||||| | |||| ||||||   ||||| | ||| |||||||||||   |||||||| ||| |    
T  41137673 catggatacctcaatacccatgggtacccg-ttagtggatacccaggagggtacggggcgggcacgggtattatatttatccaccagggcggggacgggt 41137575  T
Q  130 atcatactatccgtaccgcattgacatccct 160  Q
    |||||  |||| ||||| |||||||||||||    
T  41137574 atcatgatatctgtacc-cattgacatccct 41137545  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 43953656 - 43953613
Alignment:
Q  101 catatttatccaatggggcgggggcggatatcatactatccgta 144  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||    
T  43953656 catatttatccaatggggtgggggtggatatcatactacccgta 43953613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 3303475 - 3303528
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatac 83  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| | ||||||||    
T  3303475 catggatacctcaatacccacggatacccgcatagtggatacccacgaggatac 3303528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 17145440 - 17145556
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggat 129  Q
    ||||||||| ||||||||| | |||||||||||||||| |||| | || | || ||||  ||||| | ||| ||||||||| || || |||| | ||| |    
T  17145440 catggatacttcaatacccacaggtacccgcatagtgggtacccacgacggtatgggacgggcacgggtattatatttatctaacggagcggagacgggt 17145539  T
Q  130 atcatactatccgtacc 146  Q
    |||||||||||||||||    
T  17145540 atcatactatccgtacc 17145556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 51004312 - 51004354
Alignment:
Q  30 catggatacctcaatacccgcgggtacccgcatagtggatacc 72  Q
    |||||||||||||||| |||||| |||||||||||||| ||||    
T  51004312 catggatacctcaatatccgcggatacccgcatagtgggtacc 51004354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 28590515 - 28590563
Alignment:
Q  98 tatcatatttatccaatggggcgggggcggatatcatactatccgtacc 146  Q
    ||||||||||||||||| |||||||| || |||||||| ||||||||||    
T  28590515 tatcatatttatccaatagggcggggacgtatatcatattatccgtacc 28590563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 32923445 - 32923540
Alignment:
Q  51 gggtacccgcatagtggatacctatgaggatacgggataggcacagatatcatatttatccaatggggcgggggcggatatcatactatccgtacc 146  Q
    ||||||||||||||||| |||  | |||| ||||||   ||||| | |||||||||||||||| ||| ||||||| | ||| |||||||| |||||    
T  32923445 gggtacccgcatagtgggtacacacgagggtacggggcgggcacgggtatcatatttatccaacgggacgggggccggtattatactatctgtacc 32923540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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