View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0930_low_42 (Length: 204)
Name: NF0930_low_42
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0930_low_42 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 35542894 - 35542779
Alignment:
| Q |
86 |
atactagagaaacaatggataacaataactcaacaaaaccacccataaattgatgataactacttagagtagaaagaaagaaaaacactcttaggaaatt |
185 |
Q |
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| T |
35542894 |
atactagagaaacaatggataacaataactcaacaaaaccacccataaattgatgata---acttagagtagaaagaaagaaaatcactcttaggaaatt |
35542798 |
T |
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| Q |
186 |
agggtttgacatgagtaac |
204 |
Q |
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| T |
35542797 |
aaggtttgacatgagtaac |
35542779 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 35528332 - 35528284
Alignment:
| Q |
156 |
agaaagaaagaaaaacactcttaggaaattagggtttgacatgagtaac |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35528332 |
agaaagaaagaaaaacactcttaggaaattagggtttgacatgagtaac |
35528284 |
T |
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