View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0930_low_9 (Length: 427)
Name: NF0930_low_9
Description: NF0930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0930_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 87 - 415
Target Start/End: Complemental strand, 26578537 - 26578209
Alignment:
| Q |
87 |
tctcacaaacctttatgactcactgtattaatccatccatatttaaacaaatttttctttatatgtataaagttaattattaaaatgtacaaactatgtg |
186 |
Q |
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| T |
26578537 |
tctcacaaacctttatgactcactgtattaatccatccatatttaaacaaatttttctttatatatataaagttaattattaaaatgtacaaactatgtg |
26578438 |
T |
|
| Q |
187 |
aacatttatttccatttcaaatttgtctataatactatgannnnnnnnaatgattgtatataatgaaatgtaacagatggagatgagaatttcatgtccc |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26578437 |
aacatttatttccatttcaaatttgtctataatactatgattttttttaatgattatatataatgaaatgtaacagatggagatgagaatttcatgtccc |
26578338 |
T |
|
| Q |
287 |
taacacaacctcatgatcaaaataagaactataatgcatctctagatcatgatattggctacacttccaacactctatgggctaattcttcttcaaggta |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26578337 |
taacacaacctcatgatcaaaataagaactataatgcatctctagaacatgatattggctacacttccaacactctatgggctaattcttcttcaaggta |
26578238 |
T |
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| Q |
387 |
ccannnnnnnaatttcttggtttaatatt |
415 |
Q |
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||| ||||||||||||||||||| |
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| T |
26578237 |
ccatttttttaatttcttggtttaatatt |
26578209 |
T |
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