View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0931_high_15 (Length: 375)
Name: NF0931_high_15
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 6 - 346
Target Start/End: Original strand, 4309466 - 4309809
Alignment:
| Q |
6 |
ctccaataatatagttgaaattaagaaaataaatacaaatatagtgactttagttaggtttagtctcaagcatnnnnnnnttaaaccaaagcatgtgttt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
4309466 |
ctccaataatatagttgaaattaagaaaataaatacaaatataatgactttagttaggtttagtctcgagcataaaaaaattaaaccaaagcatatgttt |
4309565 |
T |
|
| Q |
106 |
atttttac---ggtggccacaaacatgcgttattttaaagctacaggaaggtagcttctacattaacgtaatttgaaacgcgaaaacaaacaagctacac |
202 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4309566 |
atttttatagtggtggccacaaacatgcgttattttaaagctacagtaagatagcttctacattaacgtaatttgaaacgcgaaaacaaacaagctacac |
4309665 |
T |
|
| Q |
203 |
gctgttaaacgagtatcttggagacactttttaccatttctcttctctaagaaaacaatagaccacactattacaatttgtgcacgaacagacgtgggat |
302 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4309666 |
gctgttaaacgagtattttggagacactttttaccatttctcttctctaggaaaacaatagaccacactattacaatttgtgcatgaacagacgtgggat |
4309765 |
T |
|
| Q |
303 |
gatagaaatattggtcaatgaatccgatggtaaatattaaaagc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4309766 |
gatagaaatattggtcaatgaatccgatggtaaatattaaaagc |
4309809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University