View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_high_19 (Length: 323)
Name: NF0931_high_19
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_high_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 49 - 323
Target Start/End: Original strand, 28100391 - 28100665
Alignment:
| Q |
49 |
attttcatctcaaatgtgattcatttgttttaccagacatgacccactagatgttgttaatactcagttatctgcaaagcataatgcaaactttcaattt |
148 |
Q |
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| T |
28100391 |
attttcatctcaaatgtgattcatttgttttaccagacatgacccactagatgttgttaatactcagttatctgcaaagcataatgcaaactttcaattt |
28100490 |
T |
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| Q |
149 |
tatctataactcactttataataagtaagcgtagttaactattcattagtctataatatcacactatcaacagtacgcacctcaggttcaacaatgtcga |
248 |
Q |
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| T |
28100491 |
tatctataactaactttatcataaataagcgtagttaactattcattagtctataatatcacactatcaacagtacgcacctcaggttcaacaatgtcga |
28100590 |
T |
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| Q |
249 |
attcaacagtgttcgatttcaaatcaactataagttgaatcataagtcataactacacacatcacaaacaaaacc |
323 |
Q |
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| T |
28100591 |
attcaacagtgttcgatttcaaatcaactataagttgaatcataagtcataactacacacatcacaaacaaaacc |
28100665 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 33781160 - 33781092
Alignment:
| Q |
225 |
gcacctcaggttcaacaatgtcgaattcaacagtgttcgatttcaaatcaactataagttgaatcataa |
293 |
Q |
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| T |
33781160 |
gcacctcagtttcaacaatatcaagttcatcaatgttcgatttcaaatcaacaagaggttgaatcataa |
33781092 |
T |
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