View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_high_28 (Length: 278)
Name: NF0931_high_28
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 1865607 - 1865366
Alignment:
| Q |
30 |
tgaaatatctccatgaaaagacatatcaataataccagatgatgacccaccattattaaacgcgttagataaatttgaatccacaccatgtagaatagca |
129 |
Q |
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| T |
1865607 |
tgaaatatctccatgaaaagacatatcaataataccagatgatgacccaccattattaaacgcgttagataaatttgaatccacaccatgtagaatagca |
1865508 |
T |
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| Q |
130 |
tctccgatatttggattaacctctacagcttttccatcagtgccaaacatgagaggagaagaacttgaatatccaggttttgatatgtttg--ccccaac |
227 |
Q |
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| T |
1865507 |
tctccgatatttggattaacctctacagcttttccatcaatgccaaacatgagaggagaagaacttgaatatccaggttttgatatgtttgcccccccac |
1865408 |
T |
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| Q |
228 |
tgattccttgttgtagactcatgtatgtattttgagtattat |
269 |
Q |
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| T |
1865407 |
tgattccttgttgtagactcatgtttgtattttgagtattat |
1865366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 127 - 269
Target Start/End: Complemental strand, 1865762 - 1865618
Alignment:
| Q |
127 |
gcatctccgatatttggattaacctctacagcttttccatcagtgccaaacatgagaggagaagaacttgaatatccaggttttgatatgtttg--cccc |
224 |
Q |
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| T |
1865762 |
gcatctccgatatttggattaacccccgcaacttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgcccccc |
1865663 |
T |
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| Q |
225 |
aactgattccttgttgtagactcatgtatgtattttgagtattat |
269 |
Q |
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| T |
1865662 |
aactgattccttgttgtagactcatgtttgtattttgagtattat |
1865618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 1865352 - 1865259
Alignment:
| Q |
30 |
tgaaatatctccatgaaaagacatatcaataataccagatgatgacccaccattattaaacgcgttagataaatttgaatccacaccatgtagaata |
126 |
Q |
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| T |
1865352 |
tgaaatatctccatgaaaagacatatcaataataccggatgatgatccaccattttta---gtattagataaacttgaatctacaccatgtagaata |
1865259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 35440717 - 35440763
Alignment:
| Q |
172 |
ccaaacatgagaggagaagaacttgaatatccaggttttgatatgtt |
218 |
Q |
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| T |
35440717 |
ccaaacatgtgaggagaataacttgaatatccaggttttgatgtgtt |
35440763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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