View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_high_29 (Length: 277)
Name: NF0931_high_29
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 42285638 - 42285372
Alignment:
| Q |
1 |
tatatattaaaagataccataattgatattttatatttttctcaatcaattgttcataaaaatataagagtagggtgttcaagtccttcaatatcaagat |
100 |
Q |
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| T |
42285638 |
tatatattaaaagataccataattgatattttatatttttctcaatcaattgttcataaaaatataagagtagggtgttcaagtccttcaatatcaagat |
42285539 |
T |
|
| Q |
101 |
tgagcttatttttatctactaatattaatttaggaggaagtttatttagatttatctgctgaggaaaatattttttatattagtgtttaggtattatttc |
200 |
Q |
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| T |
42285538 |
tgagcttatttttatctactaatattaatttaggaggaagtttatttagatttatctgctgaggaaaatattttttatattagtgtttaggtattatttc |
42285439 |
T |
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| Q |
201 |
taaaatattttatgaaattcacgtnnnnnnntaataaacaaaagctggttctagggtgttctctctg |
267 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42285438 |
taaaatattttatgaaattcacgtaaaaaaataataaacaaaagctggttctagggtgttctctctg |
42285372 |
T |
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