View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_high_34 (Length: 251)
Name: NF0931_high_34
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 26456604 - 26456358
Alignment:
| Q |
1 |
caggcaaataaaataacaactaaagttgtcacttattctagcatccctaacagttaagacttatcatggactctaatgtattttctcacggtaatattta |
100 |
Q |
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| T |
26456604 |
caggcaaataaaataacaactaaagttgtcacttattctagcatccctaacagttaagacttatcatggactctaatgtattttctcacggtaatattta |
26456505 |
T |
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| Q |
101 |
ccgagaagataaggggataaagtattgctattgatcacaataaacatgtataaagaataaagtaagaaaaattatagataaagagaatgaaagtgaaaac |
200 |
Q |
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| T |
26456504 |
ccgagaagataaggggataaagtattgctactgatcacaataaacatgtataaagaataaagtaagaaaaattatagataaagagaatgaaagtgaaaac |
26456405 |
T |
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| Q |
201 |
aacctttgaatgcattaaagtcattagtttccgaatattattcgaca |
247 |
Q |
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| T |
26456404 |
aacctttgaatgcattaaagtcattagttcccgaatatttttcgaca |
26456358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 29675464 - 29675240
Alignment:
| Q |
22 |
aaagttgtcacttattctagcatccctaacagttaagacttatcatggactctaatgtattttctcacggtaatatttaccgagaagataaggggataaa |
121 |
Q |
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| T |
29675464 |
aaagctgtcacttatgctagcatccctaacagt-aagacctatcatggactctaatgtattttctcacggtaatattcaccgagaagattaggggattaa |
29675366 |
T |
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| Q |
122 |
gtattgctattgatcacaataaacatgtataaagaataaagtaagaaaaattatagataaagagaatgaaagtgaaaacaacctttgaatgcattaaagt |
221 |
Q |
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| T |
29675365 |
atattgccattgaacacaataaacgcatgtatagaataaagtaagaaaagttgtacataaagaggatgaaagtaaaaacaacctttgaattcattagagt |
29675266 |
T |
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| Q |
222 |
cattagtttccgaatattattcgaca |
247 |
Q |
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| T |
29675265 |
cattagttcccgaatatttttcgaca |
29675240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 11494250 - 11494291
Alignment:
| Q |
196 |
aaaacaacctttgaatgcattaaagtcattagtttccgaata |
237 |
Q |
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| T |
11494250 |
aaaacaacctttgaatgcattagagtcattagttcccgaata |
11494291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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