View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_high_4 (Length: 487)
Name: NF0931_high_4
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 298 - 458
Target Start/End: Complemental strand, 11709421 - 11709260
Alignment:
| Q |
298 |
ctcaaaagaagaaatagtttgaaaa-gacaataggccatactaacctataaaagaagctcatatacaagtctaactgatgtcttttttaccttaacaaac |
396 |
Q |
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| T |
11709421 |
ctcaaaagaagaaatagtttgaaaaagacaataagccatactaacctataaaagaagctaatatacaagtctaactgatgtcttttttaccttaacaaac |
11709322 |
T |
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| Q |
397 |
tttattgtggaagttgcaaggcaactaacaagaagtaagtttaaccaattttagttgccttg |
458 |
Q |
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| T |
11709321 |
tttattgtgcaagttgcaaggcaactaacaagaaataagtttaaccaattttagttgccttg |
11709260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 440
Target Start/End: Complemental strand, 11710131 - 11709937
Alignment:
| Q |
254 |
caaaatgacattcattttagtaatatgcgactagtttgaaattcctc-------aaaag--aagaaatagtttgaaaagacaataggccatactaaccta |
344 |
Q |
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| T |
11710131 |
caaaatgacatacattttagtaatatgtgaccagtttgaaattccttcaaaaaaaaaagcaaaaaaacagtttgcaaagacaataaaccatgctaatcta |
11710032 |
T |
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| Q |
345 |
taaaagaagctcatatacaagtctaactgatgtcttttttaccttaacaaactttattgtggaagttgcaaggcaactaacaagaagtaagtttaa |
440 |
Q |
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| T |
11710031 |
taaaggaagctcatg-acaagtctaactgacatattgtttactttgacaaacttcactgtgcaagttgtaaggcaactatcaagaagtaagtttaa |
11709937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 35069162 - 35069262
Alignment:
| Q |
6 |
agtacacttcttatgctcaatttttcagattcattttaattgnnnnnnnnnncgtaagattagttattaagagaaacagttggcataaaagcattatcaa |
105 |
Q |
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| T |
35069162 |
agtacacttcttatgctcaatttttcagattcattttaagtg-----aaaaacgtgacattagttaataagagaaaaagttggaataaaagcattatcaa |
35069256 |
T |
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| Q |
106 |
aataat |
111 |
Q |
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| T |
35069257 |
aataat |
35069262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 35053246 - 35053280
Alignment:
| Q |
6 |
agtacacttcttatgctcaatttttcagattcatt |
40 |
Q |
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| T |
35053246 |
agtacacttcttatgctcaatttttcaggttcatt |
35053280 |
T |
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