View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0931_high_42 (Length: 244)
Name: NF0931_high_42
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0931_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 1522275 - 1522506
Alignment:
| Q |
1 |
cactaaaatagagggtatccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcgtgctcnnnnnnnnc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
1522275 |
cactaaaatagagggtatccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctcctttttttc |
1522374 |
T |
|
| Q |
101 |
tgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgannnnnnnct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1522375 |
tgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgatttttttct |
1522474 |
T |
|
| Q |
201 |
gaccaaggatcaccaaagtattcgtctctgct |
232 |
Q |
| |
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||||||||||||||||||||||||||| |||| |
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| T |
1522475 |
gaccaaggatcaccaaagtattcgtctgtgct |
1522506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 1512709 - 1512894
Alignment:
| Q |
1 |
cactaaaatagagggtatccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcgtgctcnnnnnnnnc |
100 |
Q |
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|||||||||| |||||||||||||| || |||||| || |||| || |||||||||| ||| ||||||||| ||||||||| ||||| | |
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| T |
1512709 |
cactaaaataaagggtatccaagaatctaaccttgagccctaaatgtccaaatataccagcttcaatgaggtcaataagcacatcttgctcctttttacc |
1512808 |
T |
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| Q |
101 |
tgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattga |
186 |
Q |
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|||| |||| |||||| ||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||| |
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| T |
1512809 |
tgtggaattgtctttctttccataccatgtttcaaacaaggatatggtctttttatttgacctcacaaagaaaaatccagtattga |
1512894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 1517912 - 1518095
Alignment:
| Q |
1 |
cactaaaatagagggtatccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcgtgctcnnnnnnnnc |
100 |
Q |
| |
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||||||||||||| |||||||||||||| | || | |||||||| || || |||||||||| ||||||||| ||||||||| ||||| | |
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| T |
1517912 |
cactaaaatagagagtatccaagaacctaacatttagtcccaaatgtccaattataccacctccaatgaggtcaagaagcacatcttgctccttttttcc |
1518011 |
T |
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| Q |
101 |
tgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtatt |
184 |
Q |
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|||| |||||||||||||||||| |||| | ||||||||||||||||||||||| || || ||| ||||| ||||||||||||| |
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| T |
1518012 |
tgtggaattatctttcattccattccatatttcaaacaaagatatggtcttgttattcgacctcgcaaagtaaaatccagtatt |
1518095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 16643583 - 16643768
Alignment:
| Q |
1 |
cactaaaatagagggtatccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcgtgctcnnnnnnnnc |
100 |
Q |
| |
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||||||||||||| |||||||||||||| |||||| |||||| | || || ||||||| | |||||||||| ||| ||||| ||||| | |
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| T |
16643583 |
cactaaaatagagagtatccaagaacctaaccttgagtcccaagtgtccaattataccatgtctaatgaggtcaagaagaacatcttgctctttttttcc |
16643682 |
T |
|
| Q |
101 |
tgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattga |
186 |
Q |
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|||| |||| |||||| ||||||||||||| ||||||||||||||||||||||| || || || |||||| ||||||| ||||||| |
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| T |
16643683 |
tgtggaattgtctttctttccataccatgtttcaaacaaagatatggtcttgttattggaccttacaaagtaaaatccggtattga |
16643768 |
T |
|
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