View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0931_high_51 (Length: 204)

Name: NF0931_high_51
Description: NF0931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0931_high_51
NF0931_high_51
[»] chr8 (6 HSPs)
chr8 (25-151)||(43731584-43731710)
chr8 (25-104)||(43748330-43748409)
chr8 (25-104)||(9944023-9944102)
chr8 (25-97)||(18364532-18364604)
chr8 (25-97)||(35929245-35929317)
chr8 (25-96)||(27547174-27547245)
[»] chr2 (4 HSPs)
chr2 (25-113)||(27282663-27282751)
chr2 (25-97)||(36047048-36047120)
chr2 (25-97)||(36048279-36048351)
chr2 (25-104)||(44206812-44206891)
[»] chr5 (4 HSPs)
chr5 (25-104)||(20190346-20190425)
chr5 (25-104)||(32684976-32685055)
chr5 (25-104)||(8880736-8880815)
chr5 (25-99)||(20200374-20200448)
[»] chr3 (10 HSPs)
chr3 (25-99)||(31604694-31604768)
chr3 (25-104)||(27481708-27481787)
chr3 (25-98)||(39623993-39624066)
chr3 (25-98)||(41665431-41665504)
chr3 (25-97)||(48394383-48394455)
chr3 (25-96)||(52044101-52044172)
chr3 (25-98)||(39918624-39918697)
chr3 (25-98)||(47667108-47667181)
chr3 (25-98)||(48402436-48402509)
chr3 (34-81)||(48413993-48414040)
[»] chr7 (7 HSPs)
chr7 (25-98)||(28040454-28040527)
chr7 (25-98)||(33171122-33171195)
chr7 (25-98)||(44206096-44206169)
chr7 (25-112)||(31516545-31516632)
chr7 (25-98)||(23260674-23260747)
chr7 (25-97)||(39796752-39796824)
chr7 (25-96)||(38538910-38538981)
[»] chr1 (9 HSPs)
chr1 (25-98)||(5031736-5031809)
chr1 (25-98)||(17983258-17983331)
chr1 (25-98)||(20607548-20607621)
chr1 (25-97)||(5757798-5757870)
chr1 (25-96)||(3820306-3820377)
chr1 (25-96)||(41985251-41985322)
chr1 (25-98)||(20610819-20610892)
chr1 (25-93)||(6073242-6073310)
chr1 (25-96)||(41987968-41988039)
[»] chr4 (1 HSPs)
chr4 (25-97)||(24267487-24267559)
[»] scaffold0012 (1 HSPs)
scaffold0012 (35-98)||(184931-184994)
[»] chr6 (1 HSPs)
chr6 (47-79)||(30899737-30899769)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 43731584 - 43731710
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgatatcaattttcattcttctaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43731584 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgatatcaattttcattcttctaa 43731683  T
Q  125 cttgttattctgtacagcttcatctca 151  Q
    |   ||||||||||||||||| |||||    
T  43731684 cgacttattctgtacagcttcgtctca 43731710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 43748330 - 43748409
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43748330 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 43748409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 9944023 - 9944102
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9944023 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttgttgat 9944102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 18364604 - 18364532
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 97  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18364604 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 18364532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 35929317 - 35929245
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 97  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35929317 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 35929245  T

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Target: chr8; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 27547245 - 27547174
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 96  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27547245 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 27547174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 27282663 - 27282751
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgatatcaatttt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  27282663 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgatgtctatttt 27282751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 36047120 - 36047048
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36047120 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 36047048  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 36048351 - 36048279
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36048351 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 36048279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 44206891 - 44206812
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 104  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44206891 cgccgctgccggggatcgaatccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactgtttgat 44206812  T

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Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 20190346 - 20190425
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 104  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20190346 cgccgctgccggggatcgaacccgggtcacccacgtgacaggcgggaatacttaccactatactacaacgactttttgat 20190425  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 32685055 - 32684976
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32685055 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactctttgat 32684976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 8880815 - 8880736
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8880815 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactatttgat 8880736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 20200374 - 20200448
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttt 99  Q
    |||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  20200374 cgccgctgtcggggatcaaacccgggtcacccgcatgacaggcaggaatacttaccactatactacaacgacttt 20200448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 31604768 - 31604694
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31604768 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttt 31604694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 27481708 - 27481787
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgat 104  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27481708 cgccgctgccggggatcgaacccggatcacccgcgtgacaggcgggaatacttaccactatactacaacgactgtttgat 27481787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 39623993 - 39624066
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39623993 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 39624066  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 41665431 - 41665504
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41665431 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 41665504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 48394383 - 48394455
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 97  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48394383 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 48394455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 52044172 - 52044101
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 96  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52044172 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 52044101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 39918624 - 39918697
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  39918624 cgccgttgccggggatcgaacccgggtcacccgtgtgacaggcgggaatacttaccactatactacaacaactt 39918697  T

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Target: chr3; HSP #8
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 47667108 - 47667181
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  47667108 cgccgttgccggggatcgaacccgggtcacttgcgtgacaggcgggaatacttaccactatactacaacgactt 47667181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 48402436 - 48402509
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    ||||| |||| |||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  48402436 cgccgttgccagggatcaaactcaggtcacccgcgtgacagacgggaatacttaccactatactacaacaactt 48402509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 48413993 - 48414040
Alignment:
Q  34 cggggatcgaacccgggtcacccgcgtgacaggcgggaatacttacca 81  Q
    |||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  48413993 cggggatcaaacccgagtcacccgcgtgacaagcgggaatacttacca 48414040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 28040454 - 28040527
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28040454 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 28040527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 33171195 - 33171122
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33171195 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 33171122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 44206169 - 44206096
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206169 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 44206096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 31516632 - 31516545
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttttgatatcaattt 112  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||    
T  31516632 cgccgctgccgaggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacttggtgttatcaattt 31516545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 23260747 - 23260674
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23260747 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 23260674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 39796752 - 39796824
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 97  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39796752 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 39796824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 38538981 - 38538910
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 96  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38538981 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 38538910  T

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Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 5031809 - 5031736
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5031809 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 5031736  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 17983331 - 17983258
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17983331 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 17983258  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 20607621 - 20607548
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20607621 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 20607548  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 5757870 - 5757798
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 97  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5757870 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 5757798  T

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Target: chr1; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 3820306 - 3820377
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 96  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3820306 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 3820377  T

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Target: chr1; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 41985322 - 41985251
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 96  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985322 cgccgctgccggggattgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 41985251  T

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Target: chr1; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 20610892 - 20610819
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  20610892 cgccgctgccggggatcgaacccgggtcacccgggtgacaagcgggaatacttaccactatactacaacaactt 20610819  T

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Target: chr1; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 6073242 - 6073310
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 93  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6073242 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggtgggaatacttaccactatactacaac 6073310  T

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Target: chr1; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 41988039 - 41987968
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 96  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41988039 cgccgctgccggggatcaaacctgggtcacccgggtgacaggcgggaatacttaccactatactacaacgac 41987968  T

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Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 24267487 - 24267559
Alignment:
Q  25 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 97  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  24267487 cgccgttgccggggatcgaacccgggtcgtccgcgtgacaggcggaaatacttaccactatactacaacgact 24267559  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 184994 - 184931
Alignment:
Q  35 ggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactt 98  Q
    |||||| |||||||| |||||||| ||||||  || ||||||||||||||||||||||| ||||    
T  184994 ggggattgaacccggatcacccgcatgacagatggaaatacttaccactatactacaacaactt 184931  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 30899769 - 30899737
Alignment:
Q  47 cgggtcacccgcgtgacaggcgggaatacttac 79  Q
    |||||||||||||||||||||||||||||||||    
T  30899769 cgggtcacccgcgtgacaggcgggaatacttac 30899737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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